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habp4.S hyaluronan binding protein 4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431846, updated on 3-Jul-2024

Summary

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Official Symbol
habp4.S
Official Full Name
hyaluronan binding protein 4 S homeolog
Primary source
Xenbase:XB-GENE-865923
Locus tag
XELAEV_18010175mg
See related
EnsemblRapid:ENSXLAG00005011815
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
habp4
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Genomic context

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See habp4.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (126145231..126156959)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (111437290..111449015)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene abraxas 1, BRCA1 A complex subunit S homeolog Neighboring gene zinc finger protein 367 S homeolog Neighboring gene cell division cycle 14B S homeolog Neighboring gene peroxiredoxin like 2C S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A molecular network of conserved factors keeps ribosomes dormant in the egg. Leesch F, et al. Nature, 2023 Jan. PMID 36653451, Free PMC Article
  2. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC81067

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables ribosome binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables translation elongation factor binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosome hibernation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
intracellular hyaluronan-binding protein 4.S; hyaluronan binding protein 4 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091336.1 → NP_001084805.1  intracellular hyaluronan-binding protein 4.S

    See identical proteins and their annotated locations for NP_001084805.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070578
    UniProtKB/Swiss-Prot
    A0A8J0TML5, A0A8J0TW73, A0A8J1LMD3, Q6NRY1
    UniProtKB/TrEMBL
    A0A974DW37
    Related
    ENSXLAP00005034537.1, ENSXLAT00005035420.1
    Conserved Domains (2) summary
    pfam04774
    Location:186 → 285
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:18 → 111
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    126145231..126156959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018235892.2 → XP_018091381.1  hyaluronan binding protein 4 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A974DW37

  2. XM_018235883.2 → XP_018091372.1  hyaluronan binding protein 4 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DW37

  3. XM_041574804.1 → XP_041430738.1  hyaluronan binding protein 4 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A974DW37, A0A9W2AJ16
    Related
    ENSXLAP00005034540.1, ENSXLAT00005035423.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NRY1.1 GenPept UniProtKB/Swiss-Prot:Q6NRY1

Gene LinkOut

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