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slc7a4.L solute carrier family 7 member 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431832, updated on 4-Nov-2024

Summary

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Official Symbol
slc7a4.L
Official Full Name
solute carrier family 7 member 4 L homeolog
Primary source
Xenbase:XB-GENE-960144
Locus tag
XELAEV_18007534mg
See related
EnsemblRapid:ENSXLAG00005010155 AllianceGenome:Xenbase:XB-GENE-960144
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
slc7a4
Summary
Predicted to enable amino acid transmembrane transporter activity. Predicted to act upstream of or within amino acid transport and transmembrane transport. Predicted to be located in plasma membrane. Orthologous to human SLC7A4 (solute carrier family 7 member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See slc7a4.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (163009502..163027033, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (149922390..149940078, complement)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene HscB mitochondrial iron-sulfur cluster co-chaperone L homeolog Neighboring gene leucine rich repeat containing 74A L homeolog Neighboring gene scavenger receptor class F member 2 L homeolog Neighboring gene proline dehydrogenase (oxidase) 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83777

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within amino acid transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 7 member 4 L homeolog
Names
solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
solute carrier family 7 (orphan transporter), member 4
solute carrier family 7, member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091323.1 → NP_001084792.1  solute carrier family 7 member 4 L homeolog

    See identical proteins and their annotated locations for NP_001084792.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070759
    UniProtKB/TrEMBL
    A0A974E337, Q6NRJ1
    Related
    ENSXLAP00005029930.1, ENSXLAT00005030680.1
    Conserved Domains (3) summary
    TIGR00906
    Location:10 → 611
    2A0303; cationic amino acid transport permease
    pfam13906
    Location:559 → 609
    AA_permease_C; C-terminus of AA_permease
    cl00456
    Location:37 → 294
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    163009502..163027033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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