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higd1c.L HIG1 hypoxia inducible domain family member 1C L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431813, updated on 4-Nov-2024

Summary

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Official Symbol
higd1c.L
Official Full Name
HIG1 hypoxia inducible domain family member 1C L homeolog
Primary source
Xenbase:XB-GENE-6251777
Locus tag
XELAEV_18013474mg
See related
AllianceGenome:Xenbase:XB-GENE-6251777
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ubie; gm921; ubie2; higd1c
Summary
Orthologous to human HIGD1C (HIG1 hypoxia inducible domain family member 1C). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See higd1c.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (149618577..149628481)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (143736377..143746205)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene advillin L homeolog Neighboring gene CTD small phosphatase 2 L homeolog Neighboring gene solute carrier family 11 member 2 L homeolog Neighboring gene LETM1 domain containing 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82223

General protein information

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Preferred Names
HIG1 domain family member 1C; HIG1 hypoxia inducible domain family member 1C L homeolog
Names
HIG1 hypoxia inducible domain family, member 1C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    149618577..149628481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041582551.1 → XP_041438485.1  HIG1 domain family member 1C

    UniProtKB/TrEMBL
    Q6NRS0
    Conserved Domains (1) summary
    pfam04588
    Location:26 → 76
    HIG_1_N; Hypoxia induced protein conserved region

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001091308.1: Suppressed sequence

    Description
    NM_001091308.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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