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tmcc1.L transmembrane and coiled-coil domain family 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 431802, updated on 18-Sep-2024

Summary

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Official Symbol
tmcc1.L
Official Full Name
transmembrane and coiled-coil domain family 1 L homeolog
Primary source
Xenbase:XB-GENE-5881407
Locus tag
XELAEV_18023947mg
See related
EnsemblRapid:ENSXLAG00005035777
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tmcc1
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Genomic context

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See tmcc1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (131533637..131652660, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (126291672..126411351, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene plexin D1 L homeolog Neighboring gene H1.8 linker histone L homeolog Neighboring gene thyrotropin-releasing hormone L homeolog Neighboring gene rabenosyn, RAB effector L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83809

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane and coiled-coil domain family 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091298.1 → NP_001084767.1  transmembrane and coiled-coil domain family 1 L homeolog

    See identical proteins and their annotated locations for NP_001084767.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070774
    UniProtKB/TrEMBL
    Q6NRH6
    Conserved Domains (1) summary
    pfam10267
    Location:82 → 494
    Tmemb_cc2; Predicted transmembrane and coiled-coil 2 protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    131533637..131652660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018256608.2 → XP_018112097.1  transmembrane and coiled-coil domain family 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GPR0, A0A974D7M4
    Related
    ENSXLAP00005106997.1, ENSXLAT00005109109.1

  2. XM_018256609.2 → XP_018112098.1  transmembrane and coiled-coil domain family 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GPR0, A0A974D7M4

  3. XM_018256612.2 → XP_018112101.1  transmembrane and coiled-coil domain family 1 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J0UYX7
    Related
    ENSXLAP00005106968.1, ENSXLAT00005109080.1

  4. XM_018256610.2 → XP_018112099.2  transmembrane and coiled-coil domain family 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UZ62
    Related
    ENSXLAP00005106987.1, ENSXLAT00005109099.1
    Conserved Domains (1) summary
    COG1196
    Location:324 → 459
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_018256615.2 → XP_018112104.1  transmembrane and coiled-coil domain family 1 L homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J0UZ66
    Related
    ENSXLAP00005106947.1, ENSXLAT00005109062.1

  6. XM_018256613.2 → XP_018112102.1  transmembrane and coiled-coil domain family 1 L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J0UT05
    Related
    ENSXLAP00005106955.1, ENSXLAT00005109067.1

  7. XM_018256611.2 → XP_018112100.1  transmembrane and coiled-coil domain family 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0V2V0
    Related
    ENSXLAP00005106962.1, ENSXLAT00005109074.1
Nucleotide Protein Strain
Heading Accession and Version

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