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CG11920 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 43009, updated on 2-Nov-2024

Summary

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Official Symbol
CG11920provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039274
Locus tag
Dmel_CG11920
See related
AllianceGenome:FB:FBgn0039274
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG11920
Summary
Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Located in nucleolus and nucleoplasm. Is expressed in adult brain; adult brain cell body rind; adult head; and adult heart. Orthologous to human IMP4 (IMP U3 small nucleolar ribonucleoprotein 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See CG11920 in Genome Data Viewer
Location:
96B20-96B20; 3-86 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (25074877..25076382)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20900599..20902104)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene shams Neighboring gene forkhead domain 96Ca Neighboring gene forkhead domain 96Cb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables rRNA primary transcript binding IEA
Inferred from Electronic Annotation
more info
  
enables snoRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Mpp10 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleoplasm HDA PubMed 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG11920-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    25074877..25076382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_143078.3 → NP_651335.2  uncharacterized protein Dmel_CG11920 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651335.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95SD3, Q9VBY2
    Related
    FBpp0084144
    Conserved Domains (1) summary
    smart00879
    Location:84 → 250
    Brix; The Brix domain is found in a number of eukaryotic proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q95SD3 Q95SD3
Q9VBY2 Q9VBY2

Gene LinkOut

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