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LPP LIM domain containing preferred translocation partner in lipoma [ Gallus gallus (chicken) ]

Gene ID: 429148, updated on 10-Oct-2024

Summary

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Symbol
LPPprovided by CGNC
Full Name
LIM domain containing preferred translocation partner in lipomaprovided by CGNC
Primary source
CGNC:53563
See related
Ensembl:ENSGALG00010014984
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See LPP in Genome Data Viewer
Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (14027736..14346019, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (13823174..14141651, complement)

Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751159 Neighboring gene uncharacterized LOC107054098 Neighboring gene microRNA 1653 Neighboring gene uncharacterized LOC112533004 Neighboring gene uncharacterized LOC121111467 Neighboring gene uncharacterized LOC101751200

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lipoma-preferred partner homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031567.2 → NP_001026738.1  lipoma-preferred partner homolog

    See identical proteins and their annotated locations for NP_001026738.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000240
    UniProtKB/Swiss-Prot
    Q5F464
    UniProtKB/TrEMBL
    A0A8V0YQK2
    Related
    ENSGALP00010020929.1, ENSGALT00010036047.1
    Conserved Domains (5) summary
    cd09350
    Location:408 → 461
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:468 → 520
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:528 → 593
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    PHA03247
    Location:8 → 402
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:187 → 381
    PRK10263; DNA translocase FtsK; Provisional

  2. NM_001396230.1 → NP_001383159.1  lipoma-preferred partner homolog

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000240
    UniProtKB/Swiss-Prot
    Q5F464
    UniProtKB/TrEMBL
    A0A8V0YQK2
    Conserved Domains (5) summary
    cd09350
    Location:408 → 461
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:468 → 520
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:528 → 593
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    PHA03247
    Location:8 → 402
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:187 → 381
    PRK10263; DNA translocase FtsK; Provisional

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14027736..14346019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046898474.1 → XP_046754430.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  2. XM_015291433.4 → XP_015146919.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464
    UniProtKB/TrEMBL
    A0A8V0YQK2
    Conserved Domains (5) summary
    cd09350
    Location:408 → 461
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:468 → 520
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:528 → 593
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    PHA03247
    Location:8 → 402
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:187 → 381
    PRK10263; DNA translocase FtsK; Provisional

  3. XM_046898475.1 → XP_046754431.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  4. XM_040705617.2 → XP_040561551.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464
    UniProtKB/TrEMBL
    A0A8V0YQK2
    Conserved Domains (5) summary
    cd09350
    Location:408 → 461
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:468 → 520
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:528 → 593
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    PHA03247
    Location:8 → 402
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:187 → 381
    PRK10263; DNA translocase FtsK; Provisional

  5. XM_015291432.4 → XP_015146918.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464
    UniProtKB/TrEMBL
    A0A8V0YQK2
    Conserved Domains (5) summary
    cd09350
    Location:408 → 461
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:468 → 520
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:528 → 593
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    PHA03247
    Location:8 → 402
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:187 → 381
    PRK10263; DNA translocase FtsK; Provisional

  6. XM_046898477.1 → XP_046754433.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  7. XM_046898476.1 → XP_046754432.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  8. XM_015291437.4 → XP_015146923.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464
    UniProtKB/TrEMBL
    A0A8V0YQK2
    Conserved Domains (5) summary
    cd09350
    Location:408 → 461
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09356
    Location:468 → 520
    LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09436
    Location:528 → 593
    LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    PHA03247
    Location:8 → 402
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:187 → 381
    PRK10263; DNA translocase FtsK; Provisional

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13823174..14141651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046923992.1 → XP_046779948.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  2. XM_046923995.1 → XP_046779951.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  3. XM_046923993.1 → XP_046779949.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  4. XM_046923996.1 → XP_046779952.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  5. XM_046923994.1 → XP_046779950.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  6. XM_046923999.1 → XP_046779955.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  7. XM_046923997.1 → XP_046779953.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464

  8. XM_046923998.1 → XP_046779954.1  lipoma-preferred partner homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5F464
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5F464.1 GenPept UniProtKB/Swiss-Prot:Q5F464

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