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HCRTR2 hypocretin receptor 2 [ Gallus gallus (chicken) ]

Gene ID: 428644, updated on 17-Aug-2024

Summary

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Symbol
HCRTR2provided by CGNC
Full Name
hypocretin receptor 2provided by CGNC
Primary source
CGNC:12188
See related
Ensembl:ENSGALG00010001451
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See HCRTR2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (87271774..87305364, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (87076524..87109983, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 Neighboring gene uncharacterized LOC124417838 Neighboring gene GDNF family receptor alpha like Neighboring gene family with sequence similarity 83 member B Neighboring gene uncharacterized LOC124417888

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. cDNA cloning of chicken orexin receptor and tissue distribution: sexually dimorphic expression in chicken gonads. Ohkubo T, et al. J Mol Endocrinol, 2003 Dec. PMID 14664710
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables orexin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circadian sleep/wake cycle process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in feeding behavior IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
orexin receptor type 2
Names
hypocretin (orexin) receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024584.1 → NP_001019755.1  orexin receptor type 2

    See identical proteins and their annotated locations for NP_001019755.1

    Status: PROVISIONAL

    Source sequence(s)
    AB110634
    UniProtKB/TrEMBL
    A0A8V0XBC4, Q5TMB6
    Related
    ENSGALP00010001792.1, ENSGALT00010003349.1
    Conserved Domains (2) summary
    pfam00001
    Location:73 → 366
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    pfam03827
    Location:389 → 438
    Orexin_rec2; Orexin receptor type 2

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    87271774..87305364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    87076524..87109983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials