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KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 [ Gallus gallus (chicken) ]

Gene ID: 428643, updated on 10-Oct-2024

Summary

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Symbol
KHDRBS2provided by CGNC
Full Name
KH RNA binding domain containing, signal transduction associated 2provided by CGNC
Primary source
CGNC:12169
See related
Ensembl:ENSGALG00010002330
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See KHDRBS2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (85760517..86100065)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (85566597..85906698)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053129 Neighboring gene lengsin, lens protein with glutamine synthetase domain Neighboring gene uncharacterized LOC121110330 Neighboring gene primase (DNA) subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KH domain-containing, RNA-binding, signal transduction-associated protein 2
Names
KH domain containing, RNA binding, signal transduction associated 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    85760517..86100065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_426201.8 → XP_426201.3  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520, A0A8V0X524
    Related
    ENSGALP00010003104.1, ENSGALT00010005265.1
    Conserved Domains (2) summary
    PHA03381
    Location:198 → 251
    PHA03381; tegument protein VP22; Provisional
    COG5176
    Location:59 → 181
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  2. XM_046939331.1 → XP_046795287.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X2

RNA

  1. XR_005859018.2 RNA Sequence

  2. XR_005859021.2 RNA Sequence

  3. XR_005859038.2 RNA Sequence

  4. XR_006938846.1 RNA Sequence

  5. XR_005859020.2 RNA Sequence

  6. XR_006938843.1 RNA Sequence

  7. XR_003074418.3 RNA Sequence

  8. XR_005859023.2 RNA Sequence

  9. XR_006938853.1 RNA Sequence

  10. XR_006938854.1 RNA Sequence

  11. XR_006938857.1 RNA Sequence

  12. XR_006938859.1 RNA Sequence

  13. XR_006938847.1 RNA Sequence

  14. XR_006938849.1 RNA Sequence

  15. XR_006938844.1 RNA Sequence

  16. XR_006938852.1 RNA Sequence

  17. XR_006938842.1 RNA Sequence

  18. XR_006938850.1 RNA Sequence

  19. XR_006938848.1 RNA Sequence

  20. XR_006938856.1 RNA Sequence

  21. XR_006938851.1 RNA Sequence

  22. XR_006938845.1 RNA Sequence

  23. XR_006938855.1 RNA Sequence

  24. XR_006938858.1 RNA Sequence

  25. XR_005859040.2 RNA Sequence

  26. XR_005859042.2 RNA Sequence

  27. XR_005859039.2 RNA Sequence

  28. XR_005859041.2 RNA Sequence

  29. XR_005859043.2 RNA Sequence

  30. XR_005859044.2 RNA Sequence

  31. XR_006938860.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    85566597..85906698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914799.1 → XP_046770755.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  2. XM_046914797.1 → XP_046770753.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  3. XM_046914793.1 → XP_046770749.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  4. XM_046914798.1 → XP_046770754.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  5. XM_046914822.1 → XP_046770778.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  6. XM_046914795.1 → XP_046770751.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  7. XM_046914790.1 → XP_046770746.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  8. XM_046914794.1 → XP_046770750.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  9. XM_046914789.1 → XP_046770745.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  10. XM_046914801.1 → XP_046770757.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  11. XM_046914814.1 → XP_046770770.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  12. XM_046914815.1 → XP_046770771.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  13. XM_046914819.1 → XP_046770775.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  14. XM_046914821.1 → XP_046770777.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  15. XM_046914791.1 → XP_046770747.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  16. XM_046914808.1 → XP_046770764.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  17. XM_046914817.1 → XP_046770773.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  18. XM_046914800.1 → XP_046770756.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  19. XM_046914796.1 → XP_046770752.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  20. XM_046914802.1 → XP_046770758.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  21. XM_046914807.1 → XP_046770763.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  22. XM_046914803.1 → XP_046770759.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  23. XM_046914806.1 → XP_046770762.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  24. XM_046914809.1 → XP_046770765.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  25. XM_046914805.1 → XP_046770761.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  26. XM_046914804.1 → XP_046770760.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  27. XM_046914812.1 → XP_046770768.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  28. XM_046914813.1 → XP_046770769.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  29. XM_046914810.1 → XP_046770766.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  30. XM_046914818.1 → XP_046770774.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  31. XM_046914792.1 → XP_046770748.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  32. XM_046914816.1 → XP_046770772.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  33. XM_046914820.1 → XP_046770776.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  34. XM_046914824.1 → XP_046770780.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  35. XM_046914823.1 → XP_046770779.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  36. XM_046914825.1 → XP_046770781.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520

  37. XM_040666638.2 → XP_040522572.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X520, A0A8V0X524
    Conserved Domains (2) summary
    PHA03381
    Location:198 → 251
    PHA03381; tegument protein VP22; Provisional
    COG5176
    Location:59 → 181
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  38. XM_046914826.1 → XP_046770782.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X2

  39. XM_046914827.1 → XP_046770783.1  KH domain-containing, RNA-binding, signal transduction-associated protein 2 isoform X2

Nucleotide Protein Strain
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