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KDM4B lysine demethylase 4B [ Gallus gallus (chicken) ]

Gene ID: 428354, updated on 17-Aug-2024

Summary

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Symbol
KDM4Bprovided by CGNC
Full Name
lysine demethylase 4Bprovided by CGNC
Primary source
CGNC:3001
See related
Ensembl:ENSGALG00010027292
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
JMJD2B
Orthologs
human mouse all
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Genomic context

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See KDM4B in Genome Data Viewer
Location:
chromosome: 28
Exon count:
24
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (5197113..5275240, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (4759167..4837307, complement)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, receptor type S Neighboring gene microRNA 6666 Neighboring gene uncharacterized LOC107055377 Neighboring gene uncharacterized LOC124417447 Neighboring gene uncharacterized LOC121107763 Neighboring gene ubiquitin like with PHD and ring finger domains 1 Neighboring gene perilipin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Histone demethylase KDM4B regulates otic vesicle invagination via epigenetic control of Dlx3 expression. Uribe RA, et al. J Cell Biol, 2015 Nov 23. PMID 26598618, Free PMC Article
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. KDM4B plays a critical role during inner ear invagination via modulating histone methylation of the direct target Dlx3.
    Title: Histone demethylase KDM4B regulates otic vesicle invagination via epigenetic control of Dlx3 expression.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 4B
Names
jumonji domain containing 2B
lysine (K)-specific demethylase 4B
XP_015155667.3
XP_015155668.3
XP_015155672.3
XP_040509761.2
XP_040548930.2
XP_040548931.2
XP_040548933.2
XP_040548934.2
XP_046760686.1
XP_046789965.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5197113..5275240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015300186.4 → XP_015155672.3  lysine-specific demethylase 4B isoform X5

    Related
    ENSGALP00010040445.1, ENSGALT00010066179.1

  2. XM_015300182.4 → XP_015155668.3  lysine-specific demethylase 4B isoform X3

  3. XM_015300181.4 → XP_015155667.3  lysine-specific demethylase 4B isoform X2

    Related
    ENSGALP00010040444.1, ENSGALT00010066178.1

  4. XM_046904730.1 → XP_046760686.1  lysine-specific demethylase 4B isoform X1

  5. XM_040653827.2 → XP_040509761.2  lysine-specific demethylase 4B isoform X4

    Related
    ENSGALP00010040443.1, ENSGALT00010066177.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4759167..4837307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040693000.2 → XP_040548934.2  lysine-specific demethylase 4B isoform X5

  2. XM_040692997.2 → XP_040548931.2  lysine-specific demethylase 4B isoform X3

  3. XM_040692996.2 → XP_040548930.2  lysine-specific demethylase 4B isoform X2

  4. XM_046934009.1 → XP_046789965.1  lysine-specific demethylase 4B isoform X1

  5. XM_040692999.2 → XP_040548933.2  lysine-specific demethylase 4B isoform X4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039322.1: Suppressed sequence

    Description
    NM_001039322.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
Nucleotide Protein Strain
Heading Accession and Version

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