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TLCD2 TLC domain containing 2 [ Gallus gallus (chicken) ]

Gene ID: 427825, updated on 17-Aug-2024

Summary

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Symbol
TLCD2provided by CGNC
Full Name
TLC domain containing 2provided by CGNC
Primary source
CGNC:53203
See related
Ensembl:ENSGALG00010029354
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TLCD2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (5848874..5867380, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (5585442..5604047, complement)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene Rab interacting lysosomal protein Neighboring gene microRNA mir-12234 Neighboring gene pre-mRNA processing factor 8 Neighboring gene apoptosis-inducing factor 3-like Neighboring gene microRNA 22 Neighboring gene WD repeat domain 81 Neighboring gene serpin family F member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane lipid distribution IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TLC domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5848874..5867380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046902616.1 → XP_046758572.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJR3

  2. XM_425399.8 → XP_425399.3  TLC domain-containing protein 2 isoform X3

    Conserved Domains (1) summary
    smart00724
    Location:37 → 231
    TLC; TRAM, LAG1 and CLN8 homology domains

  3. XM_040650399.2 → XP_040506333.1  TLC domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V1ALT0
    Related
    ENSGALP00010043682.1, ENSGALT00010070991.1
    Conserved Domains (1) summary
    smart00724
    Location:118 → 285
    TLC; TRAM, LAG1 and CLN8 homology domains

  4. XM_046902615.1 → XP_046758571.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJR3

  5. XM_040650398.2 → XP_040506332.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJR3
    Related
    ENSGALP00010043683.1, ENSGALT00010070992.1
    Conserved Domains (1) summary
    smart00724
    Location:118 → 286
    TLC; TRAM, LAG1 and CLN8 homology domains

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5585442..5604047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930282.1 → XP_046786238.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJR3

  2. XM_040687203.2 → XP_040543137.1  TLC domain-containing protein 2 isoform X3

    Conserved Domains (1) summary
    smart00724
    Location:37 → 231
    TLC; TRAM, LAG1 and CLN8 homology domains

  3. XM_040687202.2 → XP_040543136.1  TLC domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8V1ALT0
    Conserved Domains (1) summary
    smart00724
    Location:118 → 285
    TLC; TRAM, LAG1 and CLN8 homology domains

  4. XM_046930283.1 → XP_046786239.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJR3

  5. XM_040687201.2 → XP_040543135.1  TLC domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJR3
    Conserved Domains (1) summary
    smart00724
    Location:118 → 286
    TLC; TRAM, LAG1 and CLN8 homology domains
Nucleotide Protein Strain
Heading Accession and Version

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