U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DDX31 DEAD-box helicase 31 [ Gallus gallus (chicken) ]

Gene ID: 427759, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
DDX31provided by CGNC
Full Name
DEAD-box helicase 31provided by CGNC
Primary source
CGNC:2579
See related
Ensembl:ENSGALG00010028783
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See DDX31 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
21
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (7196980..7242973, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (6612345..6654415, complement)

Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 77 Neighboring gene BarH like homeobox 1 Neighboring gene adenylate kinase 8 Neighboring gene sperm acrosome associated 9 Neighboring gene tuberous sclerosis 1 Neighboring gene growth factor independent 1B transcriptional repressor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable ATP-dependent RNA helicase DDX31
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
XP_040505325.1
XP_040505326.1
XP_040541999.1
XP_040542000.1
XP_040542001.1
XP_040542002.1
XP_046757829.1
XP_046785045.1
XP_046785046.1
XP_046785047.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7196980..7242973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040649392.2 → XP_040505326.1  probable ATP-dependent RNA helicase DDX31 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AHR5
    Conserved Domains (3) summary
    PHA03381
    Location:88 → 186
    PHA03381; tegument protein VP22; Provisional
    COG0513
    Location:250 → 699
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:263 → 466
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31

  2. XM_040649391.2 → XP_040505325.1  probable ATP-dependent RNA helicase DDX31 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AHR5
    Related
    ENSGALP00010042901.1, ENSGALT00010069640.1
    Conserved Domains (3) summary
    PHA03381
    Location:88 → 187
    PHA03381; tegument protein VP22; Provisional
    COG0513
    Location:251 → 700
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:264 → 467
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31

  3. XM_046901873.1 → XP_046757829.1  probable ATP-dependent RNA helicase DDX31 isoform X3

RNA

  1. XR_005840547.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6612345..6654415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040686066.2 → XP_040542000.1  probable ATP-dependent RNA helicase DDX31 isoform X5

    UniProtKB/TrEMBL
    A0A8V1AHR5
    Conserved Domains (2) summary
    COG0513
    Location:114 → 563
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:127 → 330
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31

  2. XM_040686065.2 → XP_040541999.1  probable ATP-dependent RNA helicase DDX31 isoform X4

    UniProtKB/TrEMBL
    A0A8V1AHR5
    Conserved Domains (2) summary
    COG0513
    Location:115 → 564
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:128 → 331
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31

  3. XM_040686068.2 → XP_040542002.1  probable ATP-dependent RNA helicase DDX31 isoform X7

    Conserved Domains (2) summary
    COG0513
    Location:1 → 424
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:1 → 191
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31

  4. XM_046929091.1 → XP_046785047.1  probable ATP-dependent RNA helicase DDX31 isoform X7

  5. XM_046929089.1 → XP_046785045.1  probable ATP-dependent RNA helicase DDX31 isoform X7

  6. XM_046929090.1 → XP_046785046.1  probable ATP-dependent RNA helicase DDX31 isoform X7

  7. XM_040686067.2 → XP_040542001.1  probable ATP-dependent RNA helicase DDX31 isoform X6

    UniProtKB/TrEMBL
    A0A8V1AHR5
    Conserved Domains (2) summary
    COG0513
    Location:115 → 564
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17949
    Location:128 → 331
    DEADc_DDX31; DEAD-box helicase domain of DEAD box protein 31
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials