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COL7A1 collagen type VII alpha 1 [ Gallus gallus (chicken) ]

Gene ID: 427584, updated on 10-Oct-2024

Summary

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Official Symbol
COL7A1provided by CGNC
Official Full Name
collagen type VII alpha 1provided by CGNC
Primary source
CGNC:53140
See related
Ensembl:ENSGALG00010027270
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See COL7A1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
118
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (9256820..9281069)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (9287030..9309003)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene ubiquinol-cytochrome c reductase core protein 1 Neighboring gene uncharacterized LOC121106605 Neighboring gene uncharacterized LOC124417152 Neighboring gene coatomer protein complex subunit gamma 1 Neighboring gene 5-hydroxymethylcytosine binding, ES cell specific

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: collagen alpha-1(VII) chain; collagen alpha-1(VII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9256820..9281069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293373.3 → XP_015148859.3  LOW QUALITY PROTEIN: collagen alpha-1(VII) chain isoform X1

    Related
    ENSGALP00010040389.1, ENSGALT00010066123.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9287030..9309003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682303.2 → XP_040538237.1  collagen alpha-1(VII) chain isoform X3

    UniProtKB/TrEMBL
    A0A8V1AFR2
    Conserved Domains (6) summary
    smart00060
    Location:19 → 95
    FN3; Fibronectin type 3 domain
    PHA03169
    Location:2095 → 2258
    PHA03169; hypothetical protein; Provisional
    PRK12678
    Location:1131 → 1315
    PRK12678; transcription termination factor Rho; Provisional
    cd00063
    Location:474 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00109
    Location:2566 → 2619
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:657 → 815
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_040682302.2 → XP_040538236.1  collagen alpha-1(VII) chain isoform X2

    UniProtKB/TrEMBL
    A0A8V1AFR2
    Conserved Domains (6) summary
    smart00060
    Location:19 → 95
    FN3; Fibronectin type 3 domain
    PHA03169
    Location:2095 → 2258
    PHA03169; hypothetical protein; Provisional
    PRK12678
    Location:1131 → 1315
    PRK12678; transcription termination factor Rho; Provisional
    cd00063
    Location:474 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00109
    Location:2566 → 2619
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:657 → 815
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_040682306.2 → XP_040538240.1  collagen alpha-1(VII) chain isoform X6

    UniProtKB/TrEMBL
    A0A8V1AFR2
    Conserved Domains (6) summary
    smart00060
    Location:19 → 95
    FN3; Fibronectin type 3 domain
    PHA03169
    Location:2095 → 2258
    PHA03169; hypothetical protein; Provisional
    PRK12678
    Location:1131 → 1315
    PRK12678; transcription termination factor Rho; Provisional
    cd00063
    Location:474 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00109
    Location:2553 → 2606
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:657 → 815
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_040682304.2 → XP_040538238.1  collagen alpha-1(VII) chain isoform X4

    UniProtKB/TrEMBL
    A0A8V1AFR2
    Conserved Domains (6) summary
    smart00060
    Location:19 → 95
    FN3; Fibronectin type 3 domain
    PHA03169
    Location:2094 → 2257
    PHA03169; hypothetical protein; Provisional
    PRK12678
    Location:1130 → 1314
    PRK12678; transcription termination factor Rho; Provisional
    cd00063
    Location:474 → 559
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00109
    Location:2565 → 2618
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:656 → 814
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_040682305.2 → XP_040538239.1  collagen alpha-1(VII) chain isoform X5

    UniProtKB/TrEMBL
    A0A8V1AFR2
    Conserved Domains (6) summary
    smart00060
    Location:19 → 95
    FN3; Fibronectin type 3 domain
    PHA03169
    Location:2094 → 2257
    PHA03169; hypothetical protein; Provisional
    PRK12678
    Location:1130 → 1314
    PRK12678; transcription termination factor Rho; Provisional
    cd00063
    Location:473 → 558
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00109
    Location:2565 → 2618
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:656 → 814
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
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