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CLTA clathrin light chain A [ Gallus gallus (chicken) ]

Gene ID: 427284, updated on 10-Oct-2024

Summary

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Symbol
CLTAprovided by CGNC
Full Name
clathrin light chain Aprovided by CGNC
Primary source
CGNC:53038
See related
Ensembl:ENSGALG00010013183
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CLTA in Genome Data Viewer
Location:
chromosome: Z
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (52718906..52733471)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (52718906..52733471)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 14 Neighboring gene N-acetylneuraminate synthase Neighboring gene glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase Neighboring gene uncharacterized LOC121108280

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic endocytic zone cytoplasmic component IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin light chain A
Names
clathrin, light chain (Lca)
clathrin, light polypeptide (Lca)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039313.2 → NP_001034402.1  clathrin light chain A

    See identical proteins and their annotated locations for NP_001034402.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000095
    UniProtKB/TrEMBL
    A0A3Q2UEA7, Q5ZHR7
    Related
    ENSGALP00010018496.1, ENSGALT00010031631.1
    Conserved Domains (1) summary
    pfam01086
    Location:1 → 214
    Clathrin_lg_ch; Clathrin light chain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    52718906..52733471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015280417.4 → XP_015135903.1  clathrin light chain A isoform X1

    UniProtKB/TrEMBL
    A0A3Q2U5N2, A0A3Q2UEA7
    Related
    ENSGALP00010018490.1, ENSGALT00010031624.1
    Conserved Domains (1) summary
    pfam01086
    Location:1 → 244
    Clathrin_lg_ch; Clathrin light chain

  2. XM_015280418.4 → XP_015135904.1  clathrin light chain A isoform X2

    UniProtKB/TrEMBL
    A0A3Q2UEA7
    Related
    ENSGALP00010018505.1, ENSGALT00010031641.1
    Conserved Domains (1) summary
    pfam01086
    Location:1 → 232
    Clathrin_lg_ch; Clathrin light chain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    52718906..52733471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046935123.1 → XP_046791079.1  clathrin light chain A isoform X1

    UniProtKB/TrEMBL
    A0A3Q2U5N2

  2. XM_046935124.1 → XP_046791080.1  clathrin light chain A isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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