U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FAM172A family with sequence similarity 172 member A [ Gallus gallus (chicken) ]

Gene ID: 427109, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
FAM172Aprovided by CGNC
Official Full Name
family with sequence similarity 172 member Aprovided by CGNC
Primary source
CGNC:10867
See related
Ensembl:ENSGALG00010013497
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ARB2A; C5orf21
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See FAM172A in Genome Data Viewer
Location:
chromosome: Z
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (58908648..59172608)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (58908648..59172608)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene SMC5-SMC6 complex localization factor 1 Neighboring gene KIAA0825 Neighboring gene uncharacterized LOC121108265 Neighboring gene uncharacterized LOC124417495 Neighboring gene uncharacterized LOC112530550 Neighboring gene spidroin-1-like Neighboring gene nuclear receptor subfamily 2 group F member 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables siRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulatory ncRNA-mediated heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cotranscriptional regulator ARB2A homolog; cotranscriptional regulator FAM172A homolog
Names
protein FAM172A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006574.2 → NP_001006574.1  cotranscriptional regulator ARB2A homolog precursor

    See identical proteins and their annotated locations for NP_001006574.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000095
    UniProtKB/Swiss-Prot
    Q5ZK44
    UniProtKB/TrEMBL
    A0A8V0YEI6
    Related
    ENSGALP00010019230.1, ENSGALT00010032486.1
    Conserved Domains (1) summary
    pfam09757
    Location:122 → 317
    Arb2; Arb2 domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    58908648..59172608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015280521.4 → XP_015136007.1  cotranscriptional regulator FAM172A homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0YEI6
    Conserved Domains (1) summary
    pfam09757
    Location:32 → 183
    Arb2; Arb2 domain

  2. XM_040655503.2 → XP_040511437.1  cotranscriptional regulator FAM172A homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5ZK44
    UniProtKB/TrEMBL
    A0A8V0YEI6
    Conserved Domains (1) summary
    pfam09757
    Location:122 → 317
    Arb2; Arb2 domain

  3. XM_046905316.1 → XP_046761272.1  cotranscriptional regulator FAM172A homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5ZK44

RNA

  1. XR_006932328.1 RNA Sequence

  2. XR_006932329.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    58908648..59172608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046934996.1 → XP_046790952.1  cotranscriptional regulator FAM172A homolog isoform X2

  2. XM_046934995.1 → XP_046790951.1  cotranscriptional regulator FAM172A homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5ZK44

  3. XM_046934994.1 → XP_046790950.1  cotranscriptional regulator FAM172A homolog isoform X1

    UniProtKB/Swiss-Prot
    Q5ZK44

RNA

  1. XR_006937423.1 RNA Sequence

  2. XR_006937424.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZK44.1 GenPept UniProtKB/Swiss-Prot:Q5ZK44

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials