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GGPS1 geranylgeranyl diphosphate synthase 1 [ Gallus gallus (chicken) ]

Gene ID: 427092, updated on 17-Aug-2024

Summary

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Symbol
GGPS1provided by CGNC
Full Name
geranylgeranyl diphosphate synthase 1provided by CGNC
Primary source
CGNC:1872
See related
Ensembl:ENSGALG00010009465
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GGPS1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (37766056..37782846, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (37670732..37687559, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2 Neighboring gene tubulin folding cofactor E Neighboring gene uncharacterized LOC112532059 Neighboring gene AT-rich interaction domain 4B Neighboring gene translation initiation factor IF-2-like Neighboring gene RNA binding motif protein 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl pyrophosphate synthase
XP_040524452.1
XP_040524453.1
XP_040524454.1
XP_040554209.1
XP_040554210.1
XP_046770846.1
XP_046795448.1
XP_424685.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    37766056..37782846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040698276.2 → XP_040554210.1  geranylgeranyl pyrophosphate synthase isoform X2

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 197
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_424685.8 → XP_424685.4  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D5NTV1, A0A1D5NWX3
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 250
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_046939492.1 → XP_046795448.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D5NTV1, A0A1D5NWX3
    Related
    ENSGALP00010013035.1, ENSGALT00010022604.1

  4. XM_040698275.2 → XP_040554209.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D5NTV1, A0A1D5NWX3
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 250
    polyprenyl_synt; Polyprenyl synthetase

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    37670732..37687559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040668520.2 → XP_040524454.1  geranylgeranyl pyrophosphate synthase isoform X2

    Conserved Domains (1) summary
    pfam00348
    Location:1 → 197
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_040668518.2 → XP_040524452.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D5NTV1, A0A1D5NWX3
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 250
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_046914890.1 → XP_046770846.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D5NTV1, A0A1D5NWX3

  4. XM_040668519.2 → XP_040524453.1  geranylgeranyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    A0A1D5NTV1, A0A1D5NWX3
    Conserved Domains (1) summary
    pfam00348
    Location:9 → 250
    polyprenyl_synt; Polyprenyl synthetase
Nucleotide Protein
Heading Accession and Version

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