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sit stuck in traffic [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42658, updated on 11-Sep-2024

Summary

Official Symbol
sitprovided by FlyBase
Official Full Name
stuck in trafficprovided by FlyBase
Primary source
FLYBASE:FBgn0038986
Locus tag
Dmel_CG5278
See related
AllianceGenome:FB:FBgn0038986
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG5278; Dmel\CG5278
Summary
Predicted to enable fatty acid elongase activity. Involved in cholesterol homeostasis; pupal development; and steroid biosynthetic process. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in atrium; embryonic large intestine; embryonic proventriculus; and embryonic salivary gland duct. Orthologous to human ELOVL1 (ELOVL fatty acid elongase 1) and ELOVL7 (ELOVL fatty acid elongase 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See sit in Genome Data Viewer
Location:
94B4-94B4; 3-75 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22558342..22562572, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18384064..18388294, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Adiponectin receptor Neighboring gene antisense RNA:CR44062 Neighboring gene james bond Neighboring gene uncharacterized protein Neighboring gene COP9 signalosome subunit 6 Neighboring gene Diphthamide methyltransferase

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables fatty acid elongase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables fatty acid elongase activity IEA
Inferred from Electronic Annotation
more info
 
enables fatty acid elongase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in fatty acid elongation ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
involved_in fatty acid elongation, monounsaturated fatty acid IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in fatty acid elongation, polyunsaturated fatty acid IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in fatty acid elongation, saturated fatty acid IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in pupal development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in sphingolipid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in steroid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in very long-chain fatty acid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
stuck in traffic
Names
CG5278-PA
sit-PA
NP_651063.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    22558342..22562572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142806.2NP_651063.1  stuck in traffic [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_651063.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4QQC8, Q9VCY6
    Related
    FBpp0083674
    Conserved Domains (1) summary
    pfam01151
    Location:28252
    ELO; GNS1/SUR4 family