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OAT ornithine aminotransferase [ Gallus gallus (chicken) ]

Gene ID: 426430, updated on 5-Mar-2024

Summary

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Official Symbol
OATprovided by CGNC
Official Full Name
ornithine aminotransferaseprovided by CGNC
Primary source
CGNC:52788
See related
Ensembl:ENSGALG00010001877
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (32802134..32819066, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (32687276..32698097, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111073 Neighboring gene uncharacterized LOC121113296 Neighboring gene NK1 homeobox 2 Neighboring gene phospholysine phosphohistidine inorganic pyrophosphate phosphatase Neighboring gene uncharacterized LOC121111126

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ornithine aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginine catabolic process to glutamate IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in arginine catabolic process to proline via ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ornithine aminotransferase, mitochondrial
NP_001006567.1
XP_015144483.1
XP_040558423.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006567.2 → NP_001006567.1  ornithine aminotransferase, mitochondrial

    See identical proteins and their annotated locations for NP_001006567.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000232
    UniProtKB/TrEMBL
    A0A8V0XAK4, Q5ZJ29
    Related
    ENSGALP00010002572.1, ENSGALT00010004279.1
    Conserved Domains (1) summary
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    32802134..32819066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015288997.3 → XP_015144483.1  ornithine aminotransferase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8V0XAK4, Q5ZJ29
    Conserved Domains (1) summary
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

  2. XM_040702489.2 → XP_040558423.1  ornithine aminotransferase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8V0XAK4, Q5ZJ29
    Related
    ENSGALP00010002574.1, ENSGALT00010004281.1
    Conserved Domains (1) summary
    TIGR01885
    Location:40 → 437
    Orn_aminotrans; ornithine aminotransferase

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    32687276..32698097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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