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BORCS5 BLOC-1 related complex subunit 5 [ Gallus gallus (chicken) ]

Gene ID: 426116, updated on 17-Aug-2024

Summary

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Symbol
BORCS5provided by CGNC
Full Name
BLOC-1 related complex subunit 5provided by CGNC
Primary source
CGNC:10119
See related
Ensembl:ENSGALG00010021652
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
LOH12CR1
Orthologs
human mouse all
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Genomic context

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See BORCS5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (71888767..71950870)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (72200357..72262303)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene LDL receptor related protein 6 Neighboring gene uncharacterized LOC101751329 Neighboring gene MANSC domain containing 1 Neighboring gene uncharacterized LOC124417392 Neighboring gene dual specificity phosphatase 16 Neighboring gene uncharacterized LOC107053991

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lysosome localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle transport along microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of anterograde synaptic vesicle transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BORC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic side of lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BLOC-1-related complex subunit 5
Names
loss of heterozygosity 12 chromosomal region 1 protein homolog
loss of heterozygosity, 12, chromosomal region 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031357.2 → NP_001026528.1  BLOC-1-related complex subunit 5

    See identical proteins and their annotated locations for NP_001026528.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000012
    UniProtKB/Swiss-Prot
    Q5ZJA9
    Related
    ENSGALP00010031501.1, ENSGALT00010052595.1
    Conserved Domains (1) summary
    pfam10158
    Location:50 → 180
    LOH1CR12; Tumour suppressor protein

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    71888767..71950870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040701033.2 → XP_040556967.1  BLOC-1-related complex subunit 5 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZL33
    Related
    ENSGALP00010031510.1, ENSGALT00010052604.1
    Conserved Domains (1) summary
    pfam10158
    Location:48 → 178
    LOH1CR12; tumor suppressor protein

  2. XM_015290581.4 → XP_015146067.1  BLOC-1-related complex subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A1D5P955
    Related
    ENSGALP00010031505.1, ENSGALT00010052599.1
    Conserved Domains (1) summary
    pfam10158
    Location:61 → 191
    LOH1CR12; Tumour suppressor protein

  3. XM_015290585.4 → XP_015146071.1  BLOC-1-related complex subunit 5 isoform X2

    Conserved Domains (1) summary
    pfam10158
    Location:53 → 183
    LOH1CR12; Tumour suppressor protein

RNA

  1. XR_005860046.2 RNA Sequence

  2. XR_003075299.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    72200357..72262303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046908512.1 → XP_046764468.1  BLOC-1-related complex subunit 5 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZL33

  2. XM_046908510.1 → XP_046764466.1  BLOC-1-related complex subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A1D5P955

  3. XM_046908511.1 → XP_046764467.1  BLOC-1-related complex subunit 5 isoform X2

RNA

  1. XR_006932734.1 RNA Sequence

  2. XR_006932735.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZJA9.1 GenPept UniProtKB/Swiss-Prot:Q5ZJA9

Gene LinkOut

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