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CPSF7 cleavage and polyadenylation specific factor 7 [ Gallus gallus (chicken) ]

Gene ID: 426014, updated on 17-Aug-2024

Summary

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Symbol
CPSF7provided by CGNC
Full Name
cleavage and polyadenylation specific factor 7provided by CGNC
Primary source
CGNC:52646
See related
Ensembl:ENSGALG00010020075
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CPSF7 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (298218..304905, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (291564..298253, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene triokinase and FMN cyclase Neighboring gene cytochrome b561 family member A3 Neighboring gene transmembrane protein 138 Neighboring gene transmembrane protein 216 Neighboring gene succinate dehydrogenase complex assembly factor 2 Neighboring gene leucine rich repeat containing 10B Neighboring gene microRNA mir-12277

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA alternative polyadenylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 7
Names
cleavage and polyadenylation specific factor 7, 59kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    298218..304905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003641271.6 → XP_003641319.5  LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 7

    UniProtKB/TrEMBL
    A0A8V0Z5S4
    Related
    ENSGALP00010028602.1, ENSGALT00010048505.1
    Conserved Domains (2) summary
    smart00360
    Location:84 → 157
    RRM; RNA recognition motif
    COG0724
    Location:9 → 217
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    291564..298253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040672546.2 → XP_040528480.1  LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 7

    UniProtKB/TrEMBL
    A0A8V0Z5S4
    Conserved Domains (2) summary
    smart00360
    Location:84 → 157
    RRM; RNA recognition motif
    COG0724
    Location:9 → 217
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein Strain
Heading Accession and Version

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