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SSR2 signal sequence receptor subunit 2 [ Gallus gallus (chicken) ]

Gene ID: 425656, updated on 10-Oct-2024

Summary

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Symbol
SSR2provided by CGNC
Full Name
signal sequence receptor subunit 2provided by CGNC
Primary source
CGNC:487
See related
Ensembl:ENSGALG00010028760
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SSR2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (2542055..2544895)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (2677507..2680337)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene Fc receptor-like protein 3-like Neighboring gene Fc fragment of IgE receptor Ig Neighboring gene cathepsin S Neighboring gene cathepsin K Neighboring gene aryl hydrocarbon receptor nuclear translocator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. cDNA cloning of the translocon associated protein beta-subunit in the chick cerebellum. Zarkadis I, et al. Gene, 1997 Nov 12. PMID 9409764
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
translocon-associated protein subunit beta
Names
beta subunit of ranslocon associated protein
signal sequence receptor, beta (translocon-associated protein beta)
trap beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006561.2 → NP_001006561.1  translocon-associated protein subunit beta precursor

    See identical proteins and their annotated locations for NP_001006561.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000353
    UniProtKB/TrEMBL
    A0A8V1AJV4, Q5TIX2, Q5ZLW9
    Related
    ENSGALP00010042852.1, ENSGALT00010069591.1
    Conserved Domains (1) summary
    pfam05753
    Location:1 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2542055..2544895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015280006.4 → XP_015135492.1  translocon-associated protein subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJV4, Q5TIX2, Q5ZLW9
    Conserved Domains (1) summary
    pfam05753
    Location:1 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)

  2. XM_025143404.3 → XP_024999172.1  translocon-associated protein subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJV4, Q5TIX2, Q5ZLW9
    Conserved Domains (1) summary
    pfam05753
    Location:1 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)

  3. XM_015280005.4 → XP_015135491.1  translocon-associated protein subunit beta isoform X1

    UniProtKB/TrEMBL
    A0A8V1AJV4, Q5TIX2, Q5ZLW9
    Conserved Domains (1) summary
    pfam05753
    Location:1 → 179
    TRAP_beta; Translocon-associated protein beta (TRAPB)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2677507..2680337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932608.1 → XP_046788564.1  translocon-associated protein subunit beta isoform X1

    UniProtKB/TrEMBL
    Q5ZLW9

  2. XM_046932609.1 → XP_046788565.1  translocon-associated protein subunit beta isoform X1

    UniProtKB/TrEMBL
    Q5ZLW9

  3. XM_046932607.1 → XP_046788563.1  translocon-associated protein subunit beta isoform X1

    UniProtKB/TrEMBL
    Q5ZLW9
Nucleotide Protein Strain
Heading Accession and Version

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