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VPS4A vacuolar protein sorting 4 homolog A [ Gallus gallus (chicken) ]

Gene ID: 425637, updated on 17-Aug-2024

Summary

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Official Symbol
VPS4Aprovided by CGNC
Official Full Name
vacuolar protein sorting 4 homolog Aprovided by CGNC
Primary source
CGNC:66170
See related
Ensembl:ENSGALG00010008188
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See VPS4A in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (18573051..18576265)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (18921034..18924249)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene UTP4, small subunit processome component Neighboring gene syntrophin beta 2 Neighboring gene component of oligomeric golgi complex 8 Neighboring gene NIP7, nucleolar pre-rRNA processing protein Neighboring gene transmembrane p24 trafficking protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 4A
XP_015148165.2
XP_040537122.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    18573051..18576265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015292679.4 → XP_015148165.2  vacuolar protein sorting-associated protein 4A

    UniProtKB/TrEMBL
    A0A8V0XWR8
    Related
    ENSGALP00010011127.1, ENSGALT00010019579.1
    Conserved Domains (4) summary
    cd02678
    Location:5 → 79
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:374 → 434
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:318 → 359
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:121 → 291
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    18921034..18924249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681188.2 → XP_040537122.1  vacuolar protein sorting-associated protein 4A

    UniProtKB/TrEMBL
    A0A8V0XWR8
    Conserved Domains (4) summary
    cd02678
    Location:5 → 79
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:374 → 434
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:318 → 359
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:121 → 291
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4
Nucleotide Protein Strain
Heading Accession and Version

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