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PDCD1 programmed cell death 1 [ Gallus gallus (chicken) ]

Gene ID: 424913, updated on 17-Aug-2024

Summary

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Symbol
PDCD1provided by CGNC
Full Name
programmed cell death 1provided by CGNC
Primary source
CGNC:5622
See related
Ensembl:ENSGALG00010014912
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PDCD1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (14586909..14591285, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (14382949..14387326, complement)

Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene mannan binding lectin serine peptidase 1 Neighboring gene receptor transporter protein 2 Neighboring gene Tctex1 domain containing 2 Neighboring gene phosphate cytidylyltransferase 1, choline, alpha Neighboring gene solute carrier family 51 subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In vitro Interactions of Chicken Programmed Cell Death 1 (PD-1) and PD-1 Ligand-1 (PD-L1). Reddy VRAP, et al. Front Cell Infect Microbiol, 2019. PMID 31921710, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14586909..14591285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_422723.8 → XP_422723.4  programmed cell death protein 1

    Related
    ENSGALP00010020811.1, ENSGALT00010035874.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14382949..14387326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040678631.2 → XP_040534565.2  programmed cell death protein 1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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