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CG42322 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42455, updated on 18-Sep-2024

Summary

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Official Symbol
CG42322provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0259222
Locus tag
Dmel_CG42322
See related
AllianceGenome:FB:FBgn0259222
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG15688; CG15689; CG15690; CG31203; Dmel\CG42322
Old locus tag
Dmel_CG15690; Dmel_CG31203
Summary
Is expressed in adult head. Orthologous to human SLC35F3 (solute carrier family 35 member F3) and SLC35F4 (solute carrier family 35 member F4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG42322 in Genome Data Viewer
Location:
92F10-92F12; 3-69 cM
Exon count:
13
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20740108..20756639)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16565830..16582361)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene mir-995 stem loop Neighboring gene uncharacterized protein Neighboring gene Cyclin-dependent kinase 2 Neighboring gene uncharacterized protein Neighboring gene Proteasome alpha4 subunit, Testis-specific 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Syncrip Neighboring gene Tak1-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The β-alanine transporter BalaT is required for visual neurotransmission in Drosophila. Han Y, et al. Elife, 2017 Aug 14. PMID 28806173, Free PMC Article
  2. Integrating GWAS and Transcriptomics to Identify the Molecular Underpinnings of Thermal Stress Responses in Drosophila melanogaster. Lecheta MC, et al. Front Genet, 2020. PMID 32655626, Free PMC Article
  3. The Identification and Evolutionary Trends of the Solute Carrier Superfamily in Arthropods. Denecke SM, et al. Genome Biol Evol, 2020 Aug 1. PMID 32681801, Free PMC Article
  4. A phylogenetic analysis between humans and D. melanogaster: A repertoire of solute carriers in humans and flies. Ceder MM, et al. Gene, 2022 Jan 30. PMID 34673204
  5. Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing. Mazloomian A, et al. RNA Biol, 2015. PMID 26512413, Free PMC Article

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables antiporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables nucleotide-sugar transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in nucleotide-sugar transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG42322-PD
CG42322-PI
CG42322-PJ
CG42322-PL
CG42322-PM
CG42322-PN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    20740108..20756639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_169920.2 → NP_732549.2  uncharacterized protein Dmel_CG42322, isoform N [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732549.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A4V362
    Conserved Domains (1) summary
    COG0697
    Location:245 → 527
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  2. NM_001144618.3 → NP_001138090.1  uncharacterized protein Dmel_CG42322, isoform J [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001138090.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0N3
    Conserved Domains (1) summary
    COG0697
    Location:245 → 527
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  3. NM_001144617.3 → NP_001138089.1  uncharacterized protein Dmel_CG42322, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001138089.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0N3
    Conserved Domains (1) summary
    COG0697
    Location:245 → 527
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  4. NM_001144619.3 → NP_001138091.2  uncharacterized protein Dmel_CG42322, isoform M [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001138091.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0N2, Q8T0M8
    Conserved Domains (1) summary
    COG0697
    Location:245 → 527
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  5. NM_001260282.2 → NP_001247211.1  uncharacterized protein Dmel_CG42322, isoform L [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001247211.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0N2, Q8T0M8
    Conserved Domains (1) summary
    COG0697
    Location:245 → 527
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

  6. NM_169921.2 → NP_732550.1  uncharacterized protein Dmel_CG42322, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_732550.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0N2, Q8T0M8
    Related
    FBpp0289046
    Conserved Domains (1) summary
    COG0697
    Location:245 → 527
    RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4V362 A4V362
B7Z0N3 B7Z0N3
Q8T0M8 Q8T0M8

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