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CACNA1E calcium voltage-gated channel subunit alpha1 E [ Gallus gallus (chicken) ]

Gene ID: 424412, updated on 10-Oct-2024

Summary

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Symbol
CACNA1Eprovided by CGNC
Full Name
calcium voltage-gated channel subunit alpha1 Eprovided by CGNC
Primary source
CGNC:2805
See related
Ensembl:ENSGALG00010009941
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CACNA1E in Genome Data Viewer
Location:
chromosome: 8
Exon count:
52
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (5707542..5792345, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (5719451..5804308, complement)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling like 1 Neighboring gene glutamate-ammonia ligase Neighboring gene zinc finger protein 648 Neighboring gene uncharacterized LOC121111410 Neighboring gene uncharacterized LOC124417074 Neighboring gene uncharacterized LOC112532925 Neighboring gene immediate early response 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent R-type calcium channel subunit alpha-1E
Names
calcium channel, voltage-dependent, R type, alpha 1E subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5707542..5792345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025153110.3 → XP_025008878.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X13

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Conserved Domains (4) summary
    pfam00520
    Location:1568 → 1825
    Ion_trans; Ion transport protein
    pfam08763
    Location:1898 → 1972
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1826 → 1896
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
    cl28033
    Location:2068 → 2292
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_015290487.4 → XP_015145973.2  voltage-dependent R-type calcium channel subunit alpha-1E isoform X11

    UniProtKB/TrEMBL
    A0A1D5PQV7
    Conserved Domains (4) summary
    pfam00520
    Location:1572 → 1829
    Ion_trans; Ion transport protein
    pfam08648
    Location:2091 → 2200
    DUF1777; Protein of unknown function (DUF1777)
    pfam08763
    Location:1902 → 1976
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1830 → 1900
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  3. XM_046898216.1 → XP_046754172.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X10

    UniProtKB/TrEMBL
    A0A8V0Y5E5
    Related
    ENSGALP00010013592.1, ENSGALT00010023716.1

  4. XM_015290488.4 → XP_015145974.2  voltage-dependent R-type calcium channel subunit alpha-1E isoform X12

    UniProtKB/TrEMBL
    A0A1D5PQV7
    Conserved Domains (4) summary
    pfam00520
    Location:1572 → 1829
    Ion_trans; Ion transport protein
    pfam08648
    Location:2091 → 2200
    DUF1777; Protein of unknown function (DUF1777)
    pfam08763
    Location:1902 → 1976
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1830 → 1900
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  5. XM_046898212.1 → XP_046754168.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X5

  6. XM_046898211.1 → XP_046754167.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X4

  7. XM_046898210.1 → XP_046754166.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X3

    UniProtKB/TrEMBL
    F1NFD4
    Related
    ENSGALP00010013591.1, ENSGALT00010023713.1

  8. XM_046898214.1 → XP_046754170.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X7

    Related
    ENSGALP00010013587.1, ENSGALT00010023702.1

  9. XM_046898209.1 → XP_046754165.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

  10. XM_046898213.1 → XP_046754169.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X6

  11. XM_015290478.4 → XP_015145964.2  voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Conserved Domains (4) summary
    PHA03307
    Location:2091 → 2315
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam00520
    Location:1591 → 1848
    Ion_trans; Ion transport protein
    pfam08763
    Location:1921 → 1994
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1857 → 1910
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  12. XM_040705019.2 → XP_040560953.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Conserved Domains (4) summary
    PHA03307
    Location:2091 → 2315
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam00520
    Location:1591 → 1848
    Ion_trans; Ion transport protein
    pfam08763
    Location:1921 → 1994
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1857 → 1910
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  13. XM_040705026.2 → XP_040560960.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X8

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Related
    ENSGALP00010013584.1, ENSGALT00010023693.1
    Conserved Domains (3) summary
    smart01062
    Location:1842 → 1872
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    PLN03223
    Location:634 → 724
    PLN03223; Polycystin cation channel protein; Provisional
    PHA03307
    Location:1958 → 2182
    PHA03307; transcriptional regulator ICP4; Provisional

  14. XM_046898215.1 → XP_046754171.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X9

RNA

  1. XR_006930820.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5719451..5804308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040678018.2 → XP_040533952.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X13

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Conserved Domains (3) summary
    smart01062
    Location:1952 → 1982
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    PLN03223
    Location:767 → 857
    PLN03223; Polycystin cation channel protein; Provisional
    PHA03307
    Location:2068 → 2292
    PHA03307; transcriptional regulator ICP4; Provisional

  2. XM_040678016.2 → XP_040533950.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X11

    UniProtKB/TrEMBL
    A0A1D5PQV7
    Conserved Domains (3) summary
    smart01062
    Location:1956 → 1986
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    PLN03223
    Location:767 → 857
    PLN03223; Polycystin cation channel protein; Provisional
    PHA03307
    Location:2100 → 2274
    PHA03307; transcriptional regulator ICP4; Provisional

  3. XM_046923308.1 → XP_046779264.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X10

  4. XM_040678017.2 → XP_040533951.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X12

    UniProtKB/TrEMBL
    A0A1D5PQV7
    Conserved Domains (3) summary
    smart01062
    Location:1956 → 1986
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    PLN03223
    Location:767 → 857
    PLN03223; Polycystin cation channel protein; Provisional
    PHA03307
    Location:2100 → 2274
    PHA03307; transcriptional regulator ICP4; Provisional

  5. XM_046923304.1 → XP_046779260.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X5

  6. XM_046923303.1 → XP_046779259.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X4

  7. XM_046923302.1 → XP_046779258.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X3

  8. XM_046923306.1 → XP_046779262.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X7

  9. XM_046923301.1 → XP_046779257.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X1

  10. XM_046923305.1 → XP_046779261.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X6

  11. XM_040678007.2 → XP_040533941.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Conserved Domains (3) summary
    smart01062
    Location:1975 → 2005
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    PLN03223
    Location:767 → 857
    PLN03223; Polycystin cation channel protein; Provisional
    PHA03307
    Location:2091 → 2315
    PHA03307; transcriptional regulator ICP4; Provisional

  12. XM_040678006.2 → XP_040533940.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Conserved Domains (3) summary
    smart01062
    Location:1975 → 2005
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    PLN03223
    Location:767 → 857
    PLN03223; Polycystin cation channel protein; Provisional
    PHA03307
    Location:2091 → 2315
    PHA03307; transcriptional regulator ICP4; Provisional

  13. XM_040678014.2 → XP_040533948.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X8

    UniProtKB/TrEMBL
    A0A8V0Y3P9
    Conserved Domains (3) summary
    smart01062
    Location:1842 → 1872
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    PLN03223
    Location:634 → 724
    PLN03223; Polycystin cation channel protein; Provisional
    PHA03307
    Location:1958 → 2182
    PHA03307; transcriptional regulator ICP4; Provisional

  14. XM_046923307.1 → XP_046779263.1  voltage-dependent R-type calcium channel subunit alpha-1E isoform X9

RNA

  1. XR_006935468.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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