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RBM43 RNA binding motif protein 43 [ Gallus gallus (chicken) ]

Gene ID: 424313, updated on 10-Oct-2024

Summary

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Symbol
RBM43provided by CGNC
Full Name
RNA binding motif protein 43provided by CGNC
Primary source
CGNC:9479
See related
Ensembl:ENSGALG00010009690
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See RBM43 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (34708548..34713730, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (34626072..34631184, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053849 Neighboring gene Rho family GTPase 3 Neighboring gene N-myc and STAT interactor Neighboring gene TNF alpha induced protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    34708548..34713730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004943032.5 → XP_004943089.2  RNA-binding protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYM6
    Conserved Domains (1) summary
    smart00360
    Location:12 → 85
    RRM; RNA recognition motif

  2. XM_046944177.1 → XP_046800133.1  RNA-binding protein 43 isoform X3

  3. XM_046944178.1 → XP_046800134.1  RNA-binding protein 43 isoform X1

  4. XM_422159.8 → XP_422159.5  RNA-binding protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XYM6, A0A8V0YBS2
    Related
    ENSGALP00010013392.1, ENSGALT00010023150.1
    Conserved Domains (1) summary
    smart00360
    Location:10 → 83
    RRM; RNA recognition motif

  5. XM_004943031.5 → XP_004943088.2  RNA-binding protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYM6
    Conserved Domains (1) summary
    smart00360
    Location:12 → 85
    RRM; RNA recognition motif

  6. XM_015289869.4 → XP_015145355.2  RNA-binding protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XYM6, A0A8V0YBS2
    Related
    ENSGALP00010013388.1, ENSGALT00010023141.1
    Conserved Domains (1) summary
    smart00360
    Location:10 → 83
    RRM; RNA recognition motif

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    34626072..34631184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040677077.2 → XP_040533011.1  RNA-binding protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYM6

  2. XM_046921712.1 → XP_046777668.1  RNA-binding protein 43 isoform X1

  3. XM_040677078.2 → XP_040533012.1  RNA-binding protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XYM6

  4. XM_040677075.2 → XP_040533009.1  RNA-binding protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XYM6

  5. XM_040677079.2 → XP_040533013.1  RNA-binding protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XYM6

  6. XM_040677074.2 → XP_040533008.1  RNA-binding protein 43 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XYM6
    Conserved Domains (1) summary
    smart00360
    Location:18 → 91
    RRM; RNA recognition motif
Nucleotide Protein
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