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Regnase-1 Regnase 1 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42394, updated on 2-Nov-2024

Summary

Official Symbol
Regnase-1provided by FlyBase
Official Full Name
Regnase 1provided by FlyBase
Primary source
FLYBASE:FBgn0038769
Locus tag
Dmel_CG10889
See related
AllianceGenome:FB:FBgn0038769
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG10889; Dmel\CG10889
Summary
Predicted to enable RNA endonuclease activity and mRNA binding activity. Involved in mRNA catabolic process and miRNA catabolic process. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus. Is expressed in organism. Human ortholog(s) of this gene implicated in hepatitis B. Orthologous to several human genes including ZC3H12A (zinc finger CCCH-type containing 12A); ZC3H12B (zinc finger CCCH-type containing 12B); and ZC3H12C (zinc finger CCCH-type containing 12C). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See Regnase-1 in Genome Data Viewer
Location:
92C1-92C2; 3-67 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20033881..20036056, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (15859603..15861778, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene trade embargo Neighboring gene identity crisis Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene I'm not dead yet 2 Neighboring gene uncharacterized protein Neighboring gene midlife crisis

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA nuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in miRNA catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasmic ribonucleoprotein granule IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
regnase 1
Names
CG10889-PA
Regnase-1-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    20033881..20036056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142606.4NP_650863.3  regnase 1 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650863.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8T0D9, Q9VDQ2
    Related
    FBpp0083248
    Conserved Domains (1) summary
    pfam11977
    Location:131284
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain