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LCOR ligand dependent nuclear receptor corepressor [ Gallus gallus (chicken) ]

Gene ID: 423847, updated on 17-Aug-2024

Summary

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Symbol
LCORprovided by CGNC
Full Name
ligand dependent nuclear receptor corepressorprovided by CGNC
Primary source
CGNC:16580
See related
Ensembl:ENSGALG00010020866
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See LCOR in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (23209259..23282578, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (23100542..23173890, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 19 Neighboring gene slit guidance ligand 1 Neighboring gene peroxisome proliferator-activated receptor gamma, coactivator-related 1 Neighboring gene LIM domain binding 1 Neighboring gene prominin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ligand-dependent corepressor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    23209259..23282578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025151753.3 → XP_025007521.2  ligand-dependent corepressor isoform X3

    Conserved Domains (1) summary
    PRK07003
    Location:773 → 1052
    PRK07003; DNA polymerase III subunit gamma/tau

  2. XM_025151752.3 → XP_025007520.2  ligand-dependent corepressor isoform X2

    Conserved Domains (2) summary
    PTZ00121
    Location:1511 → 1684
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:723 → 1002
    PRK07003; DNA polymerase III subunit gamma/tau

  3. XM_046943099.1 → XP_046799055.1  ligand-dependent corepressor isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZG35
    Related
    ENSGALP00010029791.1, ENSGALT00010050472.1

  4. XM_046943100.1 → XP_046799056.1  ligand-dependent corepressor isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZG35

  5. XM_025151755.3 → XP_025007523.2  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:631 → 910
    PRK07003; DNA polymerase III subunit gamma/tau

  6. XM_046943097.1 → XP_046799053.1  ligand-dependent corepressor isoform X5

  7. XM_025151756.3 → XP_025007524.2  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:631 → 910
    PRK07003; DNA polymerase III subunit gamma/tau

  8. XM_040702507.2 → XP_040558441.1  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:631 → 910
    PRK07003; DNA polymerase III subunit gamma/tau

  9. XM_046943098.1 → XP_046799054.1  ligand-dependent corepressor isoform X5

  10. XM_025151758.3 → XP_025007526.2  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:631 → 910
    PRK07003; DNA polymerase III subunit gamma/tau

  11. XM_025151754.3 → XP_025007522.2  ligand-dependent corepressor isoform X4

    Conserved Domains (2) summary
    PTZ00121
    Location:1465 → 1638
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:677 → 956
    PRK07003; DNA polymerase III subunit gamma/tau

  12. XM_025151750.3 → XP_025007518.2  ligand-dependent corepressor isoform X1

    Conserved Domains (2) summary
    PTZ00121
    Location:1561 → 1734
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:773 → 1052
    PRK07003; DNA polymerase III subunit gamma/tau

  13. XM_046943095.1 → XP_046799051.1  ligand-dependent corepressor isoform X5

  14. XM_046943094.1 → XP_046799050.1  ligand-dependent corepressor isoform X5

  15. XM_040702506.2 → XP_040558440.1  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:631 → 910
    PRK07003; DNA polymerase III subunit gamma/tau

  16. XM_046943096.1 → XP_046799052.1  ligand-dependent corepressor isoform X5

  17. XM_040702512.2 → XP_040558446.1  ligand-dependent corepressor isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZG35
    Related
    ENSGALP00010029774.1, ENSGALT00010050441.1
    Conserved Domains (2) summary
    PTZ00121
    Location:1286 → 1459
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:498 → 777
    PRK07003; DNA polymerase III subunit gamma/tau

  18. XM_015288788.4 → XP_015144274.2  ligand-dependent corepressor isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZG35
    Related
    ENSGALP00010029771.1, ENSGALT00010050437.1
    Conserved Domains (2) summary
    PTZ00121
    Location:1286 → 1459
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:498 → 777
    PRK07003; DNA polymerase III subunit gamma/tau

  19. XM_040702511.2 → XP_040558445.1  ligand-dependent corepressor isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZG35
    Conserved Domains (2) summary
    PTZ00121
    Location:1286 → 1459
    PTZ00121; MAEBL; Provisional
    PRK07003
    Location:498 → 777
    PRK07003; DNA polymerase III subunit gamma/tau

  20. XM_040702515.2 → XP_040558449.1  ligand-dependent corepressor isoform X10

  21. XM_040702513.2 → XP_040558447.1  ligand-dependent corepressor isoform X8

    Conserved Domains (1) summary
    pfam05225
    Location:444 → 487
    HTH_psq; helix-turn-helix, Psq domain

  22. XM_040702514.2 → XP_040558448.1  ligand-dependent corepressor isoform X9

    Conserved Domains (1) summary
    pfam05225
    Location:352 → 395
    HTH_psq; helix-turn-helix, Psq domain

  23. XM_015288789.4 → XP_015144275.1  ligand-dependent corepressor isoform X7

    Conserved Domains (1) summary
    pfam05225
    Location:494 → 537
    HTH_psq; helix-turn-helix, Psq domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    23100542..23173890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040675113.2 → XP_040531047.1  ligand-dependent corepressor isoform X3

    Conserved Domains (1) summary
    PHA03247
    Location:742 → 978
    PHA03247; large tegument protein UL36; Provisional

  2. XM_040675112.2 → XP_040531046.1  ligand-dependent corepressor isoform X2

    Conserved Domains (2) summary
    PTZ00121
    Location:1511 → 1684
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:692 → 928
    PHA03247; large tegument protein UL36; Provisional

  3. XM_046920542.1 → XP_046776498.1  ligand-dependent corepressor isoform X6

  4. XM_046920543.1 → XP_046776499.1  ligand-dependent corepressor isoform X6

  5. XM_040675120.2 → XP_040531054.1  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:600 → 836
    PHA03247; large tegument protein UL36; Provisional

  6. XM_046920540.1 → XP_046776496.1  ligand-dependent corepressor isoform X5

  7. XM_040675118.2 → XP_040531052.1  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:600 → 836
    PHA03247; large tegument protein UL36; Provisional

  8. XM_040675116.2 → XP_040531050.1  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:600 → 836
    PHA03247; large tegument protein UL36; Provisional

  9. XM_046920541.1 → XP_046776497.1  ligand-dependent corepressor isoform X5

  10. XM_040675117.2 → XP_040531051.1  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:600 → 836
    PHA03247; large tegument protein UL36; Provisional

  11. XM_040675114.2 → XP_040531048.1  ligand-dependent corepressor isoform X4

    Conserved Domains (2) summary
    PTZ00121
    Location:1465 → 1638
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:646 → 882
    PHA03247; large tegument protein UL36; Provisional

  12. XM_040675111.2 → XP_040531045.1  ligand-dependent corepressor isoform X1

    Conserved Domains (2) summary
    PTZ00121
    Location:1561 → 1734
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:742 → 978
    PHA03247; large tegument protein UL36; Provisional

  13. XM_046920538.1 → XP_046776494.1  ligand-dependent corepressor isoform X5

  14. XM_046920537.1 → XP_046776493.1  ligand-dependent corepressor isoform X5

  15. XM_040675115.2 → XP_040531049.1  ligand-dependent corepressor isoform X5

    Conserved Domains (2) summary
    PTZ00121
    Location:1419 → 1592
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:600 → 836
    PHA03247; large tegument protein UL36; Provisional

  16. XM_046920539.1 → XP_046776495.1  ligand-dependent corepressor isoform X5

  17. XM_040675125.2 → XP_040531059.1  ligand-dependent corepressor isoform X6

    Conserved Domains (2) summary
    PTZ00121
    Location:1286 → 1459
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:467 → 703
    PHA03247; large tegument protein UL36; Provisional

  18. XM_040675123.2 → XP_040531057.1  ligand-dependent corepressor isoform X6

    Conserved Domains (2) summary
    PTZ00121
    Location:1286 → 1459
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:467 → 703
    PHA03247; large tegument protein UL36; Provisional

  19. XM_040675124.2 → XP_040531058.1  ligand-dependent corepressor isoform X6

    Conserved Domains (2) summary
    PTZ00121
    Location:1286 → 1459
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:467 → 703
    PHA03247; large tegument protein UL36; Provisional

  20. XM_040675129.2 → XP_040531063.1  ligand-dependent corepressor isoform X10

  21. XM_040675127.2 → XP_040531061.1  ligand-dependent corepressor isoform X8

    Conserved Domains (1) summary
    pfam05225
    Location:444 → 487
    HTH_psq; helix-turn-helix, Psq domain

  22. XM_040675128.2 → XP_040531062.1  ligand-dependent corepressor isoform X9

    Conserved Domains (1) summary
    pfam05225
    Location:352 → 395
    HTH_psq; helix-turn-helix, Psq domain

  23. XM_040675126.2 → XP_040531060.1  ligand-dependent corepressor isoform X7

    Conserved Domains (1) summary
    pfam05225
    Location:494 → 537
    HTH_psq; helix-turn-helix, Psq domain
Nucleotide Protein Strain
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