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CDH23 cadherin related 23 [ Gallus gallus (chicken) ]

Gene ID: 423718, updated on 17-Aug-2024

Summary

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Symbol
CDH23provided by CGNC
Full Name
cadherin related 23provided by CGNC
Primary source
CGNC:3445
See related
Ensembl:ENSGALG00010020041
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CDH23 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
72
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (12518477..12647045)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (12564461..12692926)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene unc-5 netrin receptor B Neighboring gene solute carrier family 29 member 3 Neighboring gene V-set immunoregulatory receptor Neighboring gene proactivator polypeptide-like Neighboring gene prosaposin Neighboring gene uncharacterized LOC121111122

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-23
Names
cadherin-like 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12518477..12647045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015288246.4 → XP_015143732.2  cadherin-23 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z5N9
    Conserved Domains (1) summary
    cd11304
    Location:1531 → 1628
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_421595.8 → XP_421595.5  cadherin-23 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZCC7
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_015288244.4 → XP_015143730.2  cadherin-23 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZCC7
    Related
    ENSGALP00010028548.1, ENSGALT00010048424.1
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_015288248.4 → XP_015143734.2  cadherin-23 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZBH8
    Related
    ENSGALP00010028557.1, ENSGALT00010048437.1
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  5. XM_015288249.4 → XP_015143735.2  cadherin-23 isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZCC7
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  6. XM_015288250.4 → XP_015143736.3  cadherin-23 isoform X6

    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  7. XM_040703125.2 → XP_040559059.1  cadherin-23 isoform X7

    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  8. XM_004942047.5 → XP_004942104.2  cadherin-23 isoform X8

    Conserved Domains (1) summary
    cd11304
    Location:484 → 580
    Cadherin_repeat; Cadherin tandem repeat domain

  9. XM_040703127.2 → XP_040559061.1  cadherin-23 isoform X9

    Conserved Domains (1) summary
    cd11304
    Location:189 → 285
    Cadherin_repeat; Cadherin tandem repeat domain

  10. XM_046943351.1 → XP_046799307.1  cadherin-23 isoform X10

RNA

  1. XR_006939750.1 RNA Sequence

  2. XR_003075564.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12564461..12692926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040674455.2 → XP_040530389.1  cadherin-23 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z5N9
    Conserved Domains (1) summary
    cd11304
    Location:1531 → 1628
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_040674453.2 → XP_040530387.1  cadherin-23 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZCC7
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_040674454.2 → XP_040530388.1  cadherin-23 isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZCC7
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_040674456.2 → XP_040530390.1  cadherin-23 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZBH8
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  5. XM_040674457.2 → XP_040530391.1  cadherin-23 isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZCC7
    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  6. XM_040674458.2 → XP_040530392.1  cadherin-23 isoform X6

    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  7. XM_040674459.2 → XP_040530393.1  cadherin-23 isoform X7

    Conserved Domains (1) summary
    cd11304
    Location:1576 → 1673
    Cadherin_repeat; Cadherin tandem repeat domain

  8. XM_040674460.2 → XP_040530394.1  cadherin-23 isoform X8

    Conserved Domains (1) summary
    cd11304
    Location:484 → 580
    Cadherin_repeat; Cadherin tandem repeat domain

  9. XM_040674461.2 → XP_040530395.1  cadherin-23 isoform X9

    Conserved Domains (1) summary
    cd11304
    Location:189 → 285
    Cadherin_repeat; Cadherin tandem repeat domain

  10. XM_046920669.1 → XP_046776625.1  cadherin-23 isoform X10

RNA

  1. XR_006935100.1 RNA Sequence

  2. XR_005851103.2 RNA Sequence

Nucleotide Protein
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