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RAB39B RAB39B, member RAS oncogene family [ Gallus gallus (chicken) ]

Gene ID: 422354, updated on 17-Aug-2024

Summary

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Symbol
RAB39Bprovided by CGNC
Full Name
RAB39B, member RAS oncogene familyprovided by CGNC
Primary source
CGNC:6352
See related
Ensembl:ENSGALG00010015832
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (14153980..14161050)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (14186386..14193479)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene V-set and immunoglobulin domain containing 1 Neighboring gene synaptotagmin like 2 like Neighboring gene uncharacterized LOC124417952 Neighboring gene VHL binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-39B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14153980..14161050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_420326.8 → XP_420326.4  ras-related protein Rab-39B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z052
    Related
    ENSGALP00010021995.1, ENSGALT00010038122.1
    Conserved Domains (1) summary
    cd04111
    Location:7 → 213
    Rab39; Rab GTPase family 39 (Rab39)

  2. XM_040700151.2 → XP_040556085.1  ras-related protein Rab-39B isoform X2

    Conserved Domains (1) summary
    cl38936
    Location:7 → 143
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_015278620.4 → XP_015134106.1  ras-related protein Rab-39B isoform X3

    Conserved Domains (1) summary
    cl38936
    Location:7 → 146
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RNA

  1. XR_001464232.4 RNA Sequence

  2. XR_001464234.4 RNA Sequence

  3. XR_003075043.3 RNA Sequence

  4. XR_003075044.3 RNA Sequence

  5. XR_003075045.3 RNA Sequence

  6. XR_005859829.2 RNA Sequence

  7. XR_005859830.2 RNA Sequence

  8. XR_005859831.2 RNA Sequence

  9. XR_005859832.2 RNA Sequence

  10. XR_005859833.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14186386..14193479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040670621.2 → XP_040526555.1  ras-related protein Rab-39B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z052
    Conserved Domains (1) summary
    cd04111
    Location:7 → 213
    Rab39; Rab GTPase family 39 (Rab39)

  2. XM_040670622.2 → XP_040526556.1  ras-related protein Rab-39B isoform X3

    Conserved Domains (1) summary
    cl38936
    Location:7 → 146
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RNA

  1. XR_005849471.2 RNA Sequence

  2. XR_005849472.2 RNA Sequence

  3. XR_005849469.2 RNA Sequence

  4. XR_005849473.2 RNA Sequence

  5. XR_005849474.2 RNA Sequence

  6. XR_005849470.2 RNA Sequence

  7. XR_005849475.2 RNA Sequence

Nucleotide Protein Strain
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