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FHL5 four and a half LIM domains 5 [ Gallus gallus (chicken) ]

Gene ID: 421803, updated on 10-Oct-2024

Summary

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Symbol
FHL5provided by CGNC
Full Name
four and a half LIM domains 5provided by CGNC
Primary source
CGNC:11609
See related
Ensembl:ENSGALG00010002625
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See FHL5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (72471854..72499777, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (72250132..72278069, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101747614 Neighboring gene uncharacterized LOC121113164 Neighboring gene uncharacterized LOC121110211 Neighboring gene UFM1 specific ligase 1 Neighboring gene fucosyltransferase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulator of complement activation (RCA) locus in chicken: identification of chicken RCA gene cluster and functional RCA proteins. Oshiumi H, et al. J Immunol, 2005 Aug 1. PMID 16034113

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
four and a half LIM domains protein 5
Names
activator of cAMP-responsive element modulator (CREM) in testis

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277723.2 → NP_001264652.1  four and a half LIM domains protein 5

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000065
    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    72471854..72499777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040697169.2 → XP_040553103.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

  2. XM_025148755.3 → XP_025004523.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

  3. XM_040697167.2 → XP_040553101.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Related
    ENSGALP00010003797.1, ENSGALT00010006085.1
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

  4. XM_040697168.2 → XP_040553102.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

  5. XM_015284614.4 → XP_015140100.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

  6. XM_015284612.3 → XP_015140098.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

  7. XM_015284613.4 → XP_015140099.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGL6, E1C1I0
    Related
    ENSGALP00010003801.1, ENSGALT00010006093.1
    Conserved Domains (4) summary
    cd09343
    Location:37 → 95
    LIM1_FHL; The first LIM domain of Four and a half LIM domains protein (FHL)
    cd09346
    Location:163 → 214
    LIM3_FHL; The third LIM domain of Four and a half LIM domains protein (FHL)
    cd09347
    Location:222 → 277
    LIM4_FHL; The fourth LIM domain of Four and a half LIM domains protein (FHL)
    cd09428
    Location:102 → 155
    LIM2_FHL5; The second LIM domain of Four and a half LIM domains protein 5 (FHL5)

  8. XM_046938895.1 → XP_046794851.1  four and a half LIM domains protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGL1
    Related
    ENSGALP00010003800.1, ENSGALT00010006091.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    72250132..72278069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914087.1 → XP_046770043.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    E1C1I0

  2. XM_046914082.1 → XP_046770038.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    E1C1I0

  3. XM_046914083.1 → XP_046770039.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    E1C1I0

  4. XM_046914086.1 → XP_046770042.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    E1C1I0

  5. XM_046914085.1 → XP_046770041.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    E1C1I0

  6. XM_046914081.1 → XP_046770037.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    E1C1I0

  7. XM_046914084.1 → XP_046770040.1  four and a half LIM domains protein 5 isoform X2

    UniProtKB/TrEMBL
    E1C1I0

  8. XM_046914080.1 → XP_046770036.1  four and a half LIM domains protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGL1
Nucleotide Protein Strain
Heading Accession and Version

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