U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TAF4B TATA-box binding protein associated factor 4b [ Gallus gallus (chicken) ]

Gene ID: 421086, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
TAF4Bprovided by CGNC
Full Name
TATA-box binding protein associated factor 4bprovided by CGNC
Primary source
CGNC:11252
See related
Ensembl:ENSGALG00010005536
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TAF4B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (103770829..103844126)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (103835835..103909577)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107052003 Neighboring gene SS18, nBAF chromatin remodeling complex subunit Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene uncharacterized LOC107056037 Neighboring gene uncharacterized LOC121109969

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription initiation factor TFIID subunit 4B
Names
TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    103770829..103844126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025147907.3 → XP_025003675.1  transcription initiation factor TFIID subunit 4B isoform X4

    Conserved Domains (4) summary
    PHA03378
    Location:2 → 124
    PHA03378; EBNA-3B; Provisional
    pfam05236
    Location:390 → 638
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:236 → 303
    TAFH; NHR1 homology to TAF
    cl41773
    Location:37 → 380
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_419170.8 → XP_419170.7  transcription initiation factor TFIID subunit 4B isoform X1

    UniProtKB/TrEMBL
    A0A8V0XM95, A0A8V0XUV7
    Related
    ENSGALP00010007815.1, ENSGALT00010013253.1
    Conserved Domains (4) summary
    cd08045
    Location:577 → 829
    TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    PHA03378
    Location:2 → 124
    PHA03378; EBNA-3B; Provisional
    TIGR02813
    Location:342 → 519
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    cl02658
    Location:236 → 329
    TAFH; NHR1 homology to TAF

  3. XM_025147906.3 → XP_025003674.2  transcription initiation factor TFIID subunit 4B isoform X2

    UniProtKB/TrEMBL
    A0A8V0XUV7
    Conserved Domains (4) summary
    cd08045
    Location:576 → 828
    TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    PHA03378
    Location:2 → 124
    PHA03378; EBNA-3B; Provisional
    TIGR02813
    Location:342 → 519
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    cl02658
    Location:236 → 329
    TAFH; NHR1 homology to TAF

  4. XM_015277993.4 → XP_015133479.2  transcription initiation factor TFIID subunit 4B isoform X3

    UniProtKB/TrEMBL
    A0A8V0XS93, A0A8V0XUV7
    Related
    ENSGALP00010007814.1, ENSGALT00010013252.1
    Conserved Domains (3) summary
    cd08045
    Location:506 → 758
    TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    TIGR02813
    Location:271 → 448
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    cl02658
    Location:165 → 258
    TAFH; NHR1 homology to TAF

RNA

  1. XR_003073896.3 RNA Sequence

  2. XR_003073897.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    103835835..103909577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040664404.2 → XP_040520338.1  transcription initiation factor TFIID subunit 4B isoform X4

    Conserved Domains (4) summary
    PHA03378
    Location:2 → 124
    PHA03378; EBNA-3B; Provisional
    pfam05236
    Location:390 → 638
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:236 → 303
    TAFH; NHR1 homology to TAF
    cl41773
    Location:37 → 380
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_040664401.2 → XP_040520335.1  transcription initiation factor TFIID subunit 4B isoform X1

    UniProtKB/TrEMBL
    A0A8V0XM95, A0A8V0XUV7
    Conserved Domains (4) summary
    cd08045
    Location:577 → 829
    TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    PHA03378
    Location:2 → 124
    PHA03378; EBNA-3B; Provisional
    TIGR02813
    Location:342 → 519
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    cl02658
    Location:236 → 329
    TAFH; NHR1 homology to TAF

  3. XM_040664402.2 → XP_040520336.1  transcription initiation factor TFIID subunit 4B isoform X2

    UniProtKB/TrEMBL
    A0A8V0XUV7
    Conserved Domains (4) summary
    cd08045
    Location:576 → 828
    TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    PHA03378
    Location:2 → 124
    PHA03378; EBNA-3B; Provisional
    TIGR02813
    Location:342 → 519
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    cl02658
    Location:236 → 329
    TAFH; NHR1 homology to TAF

  4. XM_040664403.2 → XP_040520337.1  transcription initiation factor TFIID subunit 4B isoform X3

    UniProtKB/TrEMBL
    A0A8V0XS93, A0A8V0XUV7
    Conserved Domains (3) summary
    cd08045
    Location:506 → 758
    TAF4; TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    TIGR02813
    Location:271 → 448
    omega_3_PfaA; polyketide-type polyunsaturated fatty acid synthase PfaA
    cl02658
    Location:165 → 258
    TAFH; NHR1 homology to TAF

RNA

  1. XR_005846682.2 RNA Sequence

  2. XR_005846683.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials