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HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 [ Gallus gallus (chicken) ]

Gene ID: 420856, updated on 10-Oct-2024

Summary

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Symbol
HIVEP1provided by CGNC
Full Name
human immunodeficiency virus type I enhancer binding protein 1provided by CGNC
Primary source
CGNC:51354
See related
Ensembl:ENSGALG00010010604
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See HIVEP1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (62436961..62556035, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (62385662..62504662, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112531759 Neighboring gene uncharacterized LOC112531758 Neighboring gene uncharacterized LOC112531761 Neighboring gene endothelin 1 Neighboring gene androgen dependent TFPI regulating protein Neighboring gene uncharacterized LOC107051667 Neighboring gene transmembrane protein 170B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conservation of mouse alpha A-crystallin promoter activity in chicken lens epithelial cells. Donovan DM, et al. J Mol Evol, 1992 Oct. PMID 1404419
  2. Regulation of the mouse alpha A-crystallin gene: isolation of a cDNA encoding a protein that binds to a cis sequence motif shared with the major histocompatibility complex class I gene and other genes. Nakamura T, et al. Mol Cell Biol, 1990 Jul. PMID 1694016, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 40
Names
chicken alphaA-CRYBP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    62436961..62556035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025147651.3 → XP_025003419.2  zinc finger protein 40 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y158
    Related
    ENSGALP00010014304.1, ENSGALT00010025248.1
    Conserved Domains (3) summary
    smart00355
    Location:2101 → 2122
    ZnF_C2H2; zinc finger
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2075 → 2095
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_004939652.5 → XP_004939709.2  zinc finger protein 40 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2101 → 2122
    ZnF_C2H2; zinc finger
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2075 → 2095
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_015275980.4 → XP_015131466.2  zinc finger protein 40 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y158
    Related
    ENSGALP00010014300.1, ENSGALT00010025235.1
    Conserved Domains (3) summary
    smart00355
    Location:2101 → 2122
    ZnF_C2H2; zinc finger
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2075 → 2095
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_046932717.1 → XP_046788673.1  zinc finger protein 40 isoform X6

  5. XM_046932711.1 → XP_046788667.1  zinc finger protein 40 isoform X6

  6. XM_046932702.1 → XP_046788658.1  zinc finger protein 40 isoform X4

  7. XM_040695437.1 → XP_040551371.1  zinc finger protein 40 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2272 → 2293
    ZnF_C2H2; zinc finger
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2246 → 2266
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. XM_040695436.1 → XP_040551370.1  zinc finger protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2272 → 2293
    ZnF_C2H2; zinc finger
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2246 → 2266
    ZF_C2H2; C2H2 Zn finger [structural motif]

  9. XM_046932726.1 → XP_046788682.1  zinc finger protein 40 isoform X6

  10. XM_046932727.1 → XP_046788683.1  zinc finger protein 40 isoform X6

  11. XM_025147654.3 → XP_025003422.2  zinc finger protein 40 isoform X6

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:1971 → 1992
    ZnF_C2H2; zinc finger
    sd00017
    Location:279 → 299
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1945 → 1965
    ZF_C2H2; C2H2 Zn finger [structural motif]

  12. XM_004939653.4 → XP_004939710.3  zinc finger protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YEB0
    Related
    ENSGALP00010014306.1, ENSGALT00010025253.1
    Conserved Domains (3) summary
    smart00355
    Location:2272 → 2293
    ZnF_C2H2; zinc finger
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2246 → 2266
    ZF_C2H2; C2H2 Zn finger [structural motif]

  13. XM_046932729.1 → XP_046788685.1  zinc finger protein 40 isoform X7

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    62385662..62504662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040663168.2 → XP_040519102.1  zinc finger protein 40 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2101 → 2122
    ZnF_C2H2; zinc finger
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2075 → 2095
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_040663167.2 → XP_040519101.1  zinc finger protein 40 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2101 → 2122
    ZnF_C2H2; zinc finger
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2075 → 2095
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_040663166.2 → XP_040519100.1  zinc finger protein 40 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2101 → 2122
    ZnF_C2H2; zinc finger
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2075 → 2095
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_046912056.1 → XP_046768012.1  zinc finger protein 40 isoform X6

  5. XM_046912055.1 → XP_046768011.1  zinc finger protein 40 isoform X6

  6. XM_046912054.1 → XP_046768010.1  zinc finger protein 40 isoform X4

  7. XM_040663165.2 → XP_040519099.1  zinc finger protein 40 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2272 → 2293
    ZnF_C2H2; zinc finger
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2246 → 2266
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. XM_040663163.2 → XP_040519097.1  zinc finger protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:2272 → 2293
    ZnF_C2H2; zinc finger
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2246 → 2266
    ZF_C2H2; C2H2 Zn finger [structural motif]

  9. XM_046912057.1 → XP_046768013.1  zinc finger protein 40 isoform X6

  10. XM_046912058.1 → XP_046768014.1  zinc finger protein 40 isoform X6

  11. XM_040663170.2 → XP_040519104.1  zinc finger protein 40 isoform X6

    UniProtKB/TrEMBL
    A0A8V0Y158
    Conserved Domains (3) summary
    smart00355
    Location:1971 → 1992
    ZnF_C2H2; zinc finger
    sd00017
    Location:279 → 299
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:1945 → 1965
    ZF_C2H2; C2H2 Zn finger [structural motif]

  12. XM_040663164.2 → XP_040519098.1  zinc finger protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YEB0
    Conserved Domains (3) summary
    smart00355
    Location:2272 → 2293
    ZnF_C2H2; zinc finger
    sd00017
    Location:580 → 600
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:2246 → 2266
    ZF_C2H2; C2H2 Zn finger [structural motif]

  13. XM_046912059.1 → XP_046768015.1  zinc finger protein 40 isoform X8

Nucleotide Protein Strain
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