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NPHP3 nephrocystin 3 [ Gallus gallus (chicken) ]

Gene ID: 420690, updated on 17-Aug-2024

Summary

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Symbol
NPHP3provided by CGNC
Full Name
nephrocystin 3provided by CGNC
Primary source
CGNC:51318
See related
Ensembl:ENSGALG00010018977
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
nephrocystin-3
Orthologs
human mouse all
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Genomic context

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See NPHP3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (42253597..42279762, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (42304991..42331164, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase family member 11 Neighboring gene atypical chemokine receptor 4 Neighboring gene ubiquitin like modifier activating enzyme 5 Neighboring gene transmembrane protein 108 Neighboring gene beaded filament structural protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in convergent extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in determination of left/right symmetry IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephrocystin-3
Names
nephronophthisis 3 (adolescent)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    42253597..42279762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_418790.7 → XP_418790.2  nephrocystin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z9P8
    Related
    ENSGALP00010027363.1, ENSGALT00010045931.1
    Conserved Domains (4) summary
    TIGR02917
    Location:905 → 1281
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1120 → 1148
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1078 → 1152
    TPR_12; Tetratricopeptide repeat
    pfam03938
    Location:109 → 188
    OmpH; Outer membrane protein (OmpH-like)

  2. XM_025147496.3 → XP_025003264.1  nephrocystin-3 isoform X3

    Conserved Domains (3) summary
    TIGR02917
    Location:751 → 1127
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:966 → 994
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:924 → 998
    TPR_12; Tetratricopeptide repeat

  3. XM_025147495.3 → XP_025003263.2  nephrocystin-3 isoform X2

    Conserved Domains (3) summary
    TIGR02917
    Location:759 → 1135
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:974 → 1002
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:932 → 1006
    TPR_12; Tetratricopeptide repeat

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    42304991..42331164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040662543.2 → XP_040518477.1  nephrocystin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z9P8
    Conserved Domains (4) summary
    TIGR02917
    Location:905 → 1281
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1120 → 1148
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1078 → 1152
    TPR_12; Tetratricopeptide repeat
    pfam03938
    Location:109 → 188
    OmpH; Outer membrane protein (OmpH-like)

  2. XM_040662545.2 → XP_040518479.1  nephrocystin-3 isoform X3

    Conserved Domains (3) summary
    TIGR02917
    Location:751 → 1127
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:966 → 994
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:924 → 998
    TPR_12; Tetratricopeptide repeat

  3. XM_040662544.2 → XP_040518478.1  nephrocystin-3 isoform X2

    Conserved Domains (3) summary
    TIGR02917
    Location:759 → 1135
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:974 → 1002
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:932 → 1006
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
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