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C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Gallus gallus (chicken) ]

Gene ID: 420575, updated on 17-Aug-2024

Summary

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Symbol
C1GALT1provided by CGNC
Full Name
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1provided by CGNC
Primary source
CGNC:7413
See related
Ensembl:ENSGALG00010003406
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See C1GALT1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (24592821..24607788)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (24621727..24636690)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene tachykinin precursor 1 Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene collagen type XXVIII alpha 1 chain Neighboring gene meiosis regulator for oocyte development Neighboring gene microRNA 1685

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
core 1 O-glycan T-synthase
core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1
core 1 beta1,3-galactosyltransferase 1
core 1 beta3-Gal-T1
core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galac
core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1
NP_001012575.1
XP_015136885.1
XP_040537076.1
XP_040537082.1
XP_040537099.1
XP_046766991.1
XP_046766992.1
XP_046766993.1
XP_046766994.1
XP_046766995.1
XP_046778061.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012557.2 → NP_001012575.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    See identical proteins and their annotated locations for NP_001012575.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000036
    UniProtKB/Swiss-Prot
    Q5F3G7
    Related
    ENSGALP00010004761.1, ENSGALT00010007928.1
    Conserved Domains (1) summary
    cl21608
    Location:108 → 249
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    24592821..24607788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681142.1 → XP_040537076.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cl21608
    Location:115 → 256
    Galactosyl_T; Galactosyltransferase

  2. XM_015281399.4 → XP_015136885.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    UniProtKB/Swiss-Prot
    Q5F3G7
    Conserved Domains (1) summary
    cl21608
    Location:108 → 249
    Galactosyl_T; Galactosyltransferase

  3. XM_040681165.2 → XP_040537099.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    UniProtKB/Swiss-Prot
    Q5F3G7
    Conserved Domains (1) summary
    cl21608
    Location:108 → 249
    Galactosyl_T; Galactosyltransferase

  4. XM_046922105.1 → XP_046778061.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2TYY0
    Related
    ENSGALP00010004760.1, ENSGALT00010007927.1

  5. XM_040681148.1 → XP_040537082.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    UniProtKB/Swiss-Prot
    Q5F3G7
    Conserved Domains (1) summary
    cl21608
    Location:108 → 249
    Galactosyl_T; Galactosyltransferase

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    24621727..24636690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046911035.1 → XP_046766991.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

  2. XM_046911037.1 → XP_046766993.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    UniProtKB/Swiss-Prot
    Q5F3G7

  3. XM_046911039.1 → XP_046766995.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    UniProtKB/Swiss-Prot
    Q5F3G7

  4. XM_046911036.1 → XP_046766992.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2TYY0

  5. XM_046911038.1 → XP_046766994.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    UniProtKB/Swiss-Prot
    Q5F3G7
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5F3G7.1 GenPept UniProtKB/Swiss-Prot:Q5F3G7

Gene LinkOut

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