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PYCRL pyrroline-5-carboxylate reductase-like [ Gallus gallus (chicken) ]

Gene ID: 420293, updated on 17-Aug-2024

Summary

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Symbol
PYCRLprovided by CGNC
Full Name
pyrroline-5-carboxylate reductase-likeprovided by CGNC
Primary source
CGNC:12058
See related
Ensembl:ENSGALG00010008588
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PYCRL in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (147804991..147808723, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (148175523..148179279, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 delta Neighboring gene tigger transposable element derived 5 Neighboring gene tissue specific transplantation antigen P35B Neighboring gene feather keratin 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyrroline-5-carboxylate reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-proline biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyrroline-5-carboxylate reductase 3
XP_040521162.1
XP_040521163.1
XP_040552023.1
XP_418406.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    147804991..147808723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040696089.2 → XP_040552023.1  pyrroline-5-carboxylate reductase 3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y326
    Conserved Domains (1) summary
    PLN02688
    Location:6 → 250
    PLN02688; pyrroline-5-carboxylate reductase

  2. XM_418406.8 → XP_418406.3  pyrroline-5-carboxylate reductase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y326
    Related
    ENSGALP00010011852.1, ENSGALT00010020432.1
    Conserved Domains (3) summary
    PLN02688
    Location:6 → 270
    PLN02688; pyrroline-5-carboxylate reductase
    pfam03807
    Location:9 → 101
    F420_oxidored; NADP oxidoreductase coenzyme F420-dependent
    pfam14748
    Location:163 → 267
    P5CR_dimer; Pyrroline-5-carboxylate reductase dimerization

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    148175523..148179279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040665229.2 → XP_040521163.1  pyrroline-5-carboxylate reductase 3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y326
    Conserved Domains (1) summary
    PLN02688
    Location:6 → 250
    PLN02688; pyrroline-5-carboxylate reductase

  2. XM_040665228.2 → XP_040521162.1  pyrroline-5-carboxylate reductase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y326
    Conserved Domains (1) summary
    PLN02688
    Location:6 → 270
    PLN02688; pyrroline-5-carboxylate reductase
Nucleotide Protein Strain
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