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APBA3 amyloid beta (A4) precursor protein-binding, family A, member 3 [ Gallus gallus (chicken) ]

Gene ID: 420069, updated on 17-Aug-2024

Summary

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Official Symbol
APBA3provided by CGNC
Official Full Name
amyloid beta (A4) precursor protein-binding, family A, member 3provided by CGNC
Primary source
CGNC:473
See related
Ensembl:ENSGALG00010028103
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See APBA3 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (1399750..1405545)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (972610..978401)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene retina and anterior neural fold homeobox 2 Neighboring gene paracaspase 2 Neighboring gene mitochondrial ribosomal protein L54 Neighboring gene tight junction protein 3 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
amyloid beta A4 precursor protein-binding family A member 3; amyloid-beta A4 precursor protein-binding family A member 3
Names
amyloid beta (A4) precursor protein-binding, family A, member 3 (X11-like 2)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1399750..1405545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_418188.8 → XP_418188.4  amyloid-beta A4 precursor protein-binding family A member 3

    UniProtKB/TrEMBL
    A0A8V1AJA8
    Related
    ENSGALP00010041835.1, ENSGALT00010068092.1
    Conserved Domains (2) summary
    cd00992
    Location:601 → 674
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01208
    Location:328 → 479
    PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    972610..978401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040692505.2 → XP_040548439.1  amyloid-beta A4 precursor protein-binding family A member 3

    UniProtKB/TrEMBL
    A0A8V1AJA8
    Conserved Domains (2) summary
    cd00992
    Location:601 → 674
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01208
    Location:328 → 479
    PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
Nucleotide Protein
Heading Accession and Version

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