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ATP2B4 ATPase plasma membrane Ca2+ transporting 4 [ Gallus gallus (chicken) ]

Gene ID: 419934, updated on 10-Oct-2024

Summary

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Official Symbol
ATP2B4provided by CGNC
Official Full Name
ATPase plasma membrane Ca2+ transporting 4provided by CGNC
Primary source
CGNC:2630
See related
Ensembl:ENSGALG00010027490
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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Genomic context

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See ATP2B4 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
23
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (5251562..5288735)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (5205294..5242482)

Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055169 Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene opticin Neighboring gene uncharacterized LOC121107641 Neighboring gene uncharacterized LOC107055168 Neighboring gene uncharacterized LOC124417405 Neighboring gene microRNA 7454

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Circadian miR-449c-5p regulates uterine Ca(2+) transport during eggshell calcification in chickens. Cui Z, et al. BMC Genomics, 2021 Oct 26. PMID 34702171, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Circadian miR-449c-5p regulates uterine Ca(2+) transport during eggshell calcification in chickens.
    Title: Circadian miR-449c-5p regulates uterine Ca(2+) transport during eggshell calcification in chickens.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plasma membrane calcium-transporting ATPase 4; plasma membrane calcium-transporting ATPase 2
Names
ATPase, Ca++ transporting, plasma membrane 4
XP_004948504.1
XP_015154447.1
XP_015154448.1
XP_015154450.1
XP_040508978.1
XP_040508979.1
XP_040508980.1
XP_040508981.1
XP_040508982.1
XP_040547083.1
XP_040547085.1
XP_040547086.1
XP_040547087.1
XP_040547088.1
XP_040547089.1
XP_040547090.1
XP_040547092.1
XP_040547093.1
XP_040547094.1
XP_046760106.1
XP_046760108.1
XP_046788994.1
XP_418055.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5251562..5288735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_418055.8 → XP_418055.4  plasma membrane calcium-transporting ATPase 4 isoform X6

    UniProtKB/TrEMBL
    A0A8V1AGR9
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1118
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  2. XM_040653044.2 → XP_040508978.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  3. XM_015298961.4 → XP_015154447.1  plasma membrane calcium-transporting ATPase 4 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PJX0, E1C784
    Related
    ENSGALP00010040788.1, ENSGALT00010066611.1
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1139
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  4. XM_015298964.4 → XP_015154450.1  plasma membrane calcium-transporting ATPase 4 isoform X7

    UniProtKB/TrEMBL
    A0A1D5PU07, A0A8V1AGR9
    Related
    ENSGALP00010040785.1, ENSGALT00010066606.1
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1042
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1081 → 1106
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  5. XM_040653047.2 → XP_040508981.1  plasma membrane calcium-transporting ATPase 4 isoform X2

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1042
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  6. XM_004948447.5 → XP_004948504.1  plasma membrane calcium-transporting ATPase 4 isoform X5

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1042
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1081 → 1127
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  7. XM_046904152.1 → XP_046760108.1  plasma membrane calcium-transporting ATPase 2 isoform X4

    Related
    ENSGALP00010040782.1, ENSGALT00010066600.1

  8. XM_040653046.2 → XP_040508980.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  9. XM_040653045.2 → XP_040508979.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  10. XM_015298962.4 → XP_015154448.1  plasma membrane calcium-transporting ATPase 4 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PJX0, E1C784
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1139
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  11. XM_046904150.1 → XP_046760106.1  plasma membrane calcium-transporting ATPase 4 isoform X1

  12. XM_040653048.2 → XP_040508982.1  plasma membrane calcium-transporting ATPase 4 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PJX0, E1C784
    Related
    ENSGALP00010040784.1, ENSGALT00010066603.1
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1139
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

RNA

  1. XR_006932148.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5205294..5242482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040691159.2 → XP_040547093.1  plasma membrane calcium-transporting ATPase 4 isoform X6

    UniProtKB/TrEMBL
    A0A8V1AGR9
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1118
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  2. XM_040691149.2 → XP_040547083.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  3. XM_040691154.2 → XP_040547088.1  plasma membrane calcium-transporting ATPase 4 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PJX0, E1C784
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1139
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  4. XM_040691160.2 → XP_040547094.1  plasma membrane calcium-transporting ATPase 4 isoform X7

    UniProtKB/TrEMBL
    A0A1D5PU07, A0A8V1AGR9
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1042
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1081 → 1106
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  5. XM_040691153.2 → XP_040547087.1  plasma membrane calcium-transporting ATPase 4 isoform X2

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1042
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  6. XM_040691158.2 → XP_040547092.1  plasma membrane calcium-transporting ATPase 4 isoform X5

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1042
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1081 → 1127
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  7. XM_040691152.2 → XP_040547086.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  8. XM_040691151.2 → XP_040547085.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    UniProtKB/TrEMBL
    E1C784
    Conserved Domains (1) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase

  9. XM_040691156.2 → XP_040547090.1  plasma membrane calcium-transporting ATPase 4 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PJX0, E1C784
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1139
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  10. XM_046933038.1 → XP_046788994.1  plasma membrane calcium-transporting ATPase 4 isoform X1

  11. XM_040691155.2 → XP_040547089.1  plasma membrane calcium-transporting ATPase 4 isoform X3

    UniProtKB/TrEMBL
    A0A1D5PJX0, E1C784
    Conserved Domains (2) summary
    TIGR01517
    Location:12 → 1054
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1093 → 1139
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

RNA

  1. XR_006937147.1 RNA Sequence

Nucleotide Protein Strain
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