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TAF8 TATA-box binding protein associated factor 8 [ Gallus gallus (chicken) ]

Gene ID: 419929, updated on 10-Oct-2024

Summary

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Symbol
TAF8provided by CGNC
Full Name
TATA-box binding protein associated factor 8provided by CGNC
Primary source
CGNC:2552
See related
Ensembl:ENSGALG00010026671
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TBN
Orthologs
human mouse all
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Genomic context

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See TAF8 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (5110045..5117712)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (5063730..5071439)

Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 20 Neighboring gene bystin like Neighboring gene cyclin D3 Neighboring gene chitinase-M31, acidic Neighboring gene primary cilia formation

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 8
Names
TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa
TBP-associated factor 8
taube nuss homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030923.2 → NP_001026094.1  transcription initiation factor TFIID subunit 8

    See identical proteins and their annotated locations for NP_001026094.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000356
    UniProtKB/Swiss-Prot
    Q5ZMS1
    UniProtKB/TrEMBL
    A0A8V1A8P9
    Conserved Domains (2) summary
    cd08049
    Location:81 → 134
    TAF8; TATA Binding Protein (TBP) Associated Factor 8
    cl22885
    Location:1 → 43
    TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5110045..5117712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015298954.4 → XP_015154440.1  transcription initiation factor TFIID subunit 8 isoform X1

    UniProtKB/TrEMBL
    A0A8V1ABJ9, R4GIW1
    Related
    ENSGALP00010039603.1, ENSGALT00010064747.1
    Conserved Domains (2) summary
    cd08049
    Location:149 → 202
    TAF8; TATA Binding Protein (TBP) Associated Factor 8
    pfam07524
    Location:35 → 111
    Bromo_TP; Bromodomain associated

  2. XM_046904134.1 → XP_046760090.1  transcription initiation factor TFIID subunit 8 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A167

  3. XM_015298955.4 → XP_015154441.2  transcription initiation factor TFIID subunit 8 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A167, A0A8V1A8P9
    Related
    ENSGALP00010039607.1, ENSGALT00010064756.1
    Conserved Domains (2) summary
    smart00576
    Location:21 → 91
    BTP; Bromodomain transcription factors and PHD domain containing proteins
    cd08049
    Location:131 → 184
    TAF8; TATA Binding Protein (TBP) Associated Factor 8

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5063730..5071439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046933001.1 → XP_046788957.1  transcription initiation factor TFIID subunit 8 isoform X1

    UniProtKB/TrEMBL
    R4GIW1

  2. XM_046933002.1 → XP_046788958.1  transcription initiation factor TFIID subunit 8 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A167

  3. XM_046933004.1 → XP_046788960.1  transcription initiation factor TFIID subunit 8 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A167
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZMS1.1 GenPept UniProtKB/Swiss-Prot:Q5ZMS1

Gene LinkOut

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