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MAPRE1 microtubule associated protein RP/EB family member 1 [ Gallus gallus (chicken) ]

Gene ID: 419288, updated on 17-Aug-2024

Summary

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Symbol
MAPRE1provided by CGNC
Full Name
microtubule associated protein RP/EB family member 1provided by CGNC
Primary source
CGNC:50961
See related
Ensembl:ENSGALG00010013275
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See MAPRE1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (10606355..10613992)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (10393704..10401320)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene COMM domain containing 7 Neighboring gene DNA methyltransferase 3 beta Neighboring gene BPI fold containing family B member 3 Neighboring gene BPI fold-containing family B member 6 Neighboring gene BPI fold containing family B member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of microtubule polymerization or depolymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spindle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle midzone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microtubule-associated protein RP/EB family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030860.2 → NP_001026031.1  microtubule-associated protein RP/EB family member 1

    See identical proteins and their annotated locations for NP_001026031.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000328
    UniProtKB/Swiss-Prot
    Q5ZLC7
    Related
    ENSGALP00010018719.1, ENSGALT00010031922.1
    Conserved Domains (3) summary
    pfam00307
    Location:16 → 114
    CH; Calponin homology (CH) domain
    pfam03271
    Location:201 → 238
    EB1; EB1-like C-terminal motif
    cl15838
    Location:53 → 203
    Phage_GPO; Phage capsid scaffolding protein (GPO) serine peptidase

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10606355..10613992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015296403.4 → XP_015151889.2  microtubule-associated protein RP/EB family member 1 isoform X1

    Conserved Domains (1) summary
    cl26556
    Location:16 → 254
    EB1; EB1-like C-terminal motif

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    10393704..10401320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930785.1 → XP_046786741.1  microtubule-associated protein RP/EB family member 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZLC7.1 GenPept UniProtKB/Swiss-Prot:Q5ZLC7

Gene LinkOut

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Molecular Biology Databases
Research Materials