U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NSFL1C NSFL1 cofactor [ Gallus gallus (chicken) ]

Gene ID: 419268, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Symbol
NSFL1Cprovided by CGNC
Full Name
NSFL1 cofactorprovided by CGNC
Primary source
CGNC:50955
See related
Ensembl:ENSGALG00010013539
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NSFL1C in Genome Data Viewer
Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 20 NC_052551.1 (10149680..10157367)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 20 NC_052592.1 (9931373..9939064)

Chromosome 20 - NC_052551.1Genomic Context describing neighboring genes Neighboring gene prodynorphin Neighboring gene signal regulatory protein alpha Neighboring gene tyrosine-protein phosphatase non-receptor type substrate 1-like Neighboring gene microRNA mir-12243 Neighboring gene signal-regulatory protein alpha Neighboring gene FK506 binding protein 1A Neighboring gene syndecan binding protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
NSFL1 cofactor p47
Names
NSFL1 (p97) cofactor (p47)
p97 cofactor p47

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030859.2 → NP_001026030.1  NSFL1 cofactor p47

    See identical proteins and their annotated locations for NP_001026030.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000328
    UniProtKB/Swiss-Prot
    Q5ZK10
    Related
    ENSGALP00010019296.1, ENSGALT00010032572.1
    Conserved Domains (3) summary
    cd01770
    Location:291 → 369
    p47_UBX; p47-like ubiquitin domain
    smart00553
    Location:177 → 269
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cd14348
    Location:5 → 44
    UBA_p47; UBA-like domain found in NSFL1 cofactor p47 and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052551.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    10149680..10157367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015296393.4 → XP_015151879.2  NSFL1 cofactor p47 isoform X1

    Conserved Domains (2) summary
    smart00553
    Location:205 → 297
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cd17162
    Location:316 → 397
    UBX_UBXN2C; Ubiquitin regulatory domain X (UBX) found in NSFL1 cofactor (also known as UBX domain-containing protein 2C (UBXN2C) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052592.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9931373..9939064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046930763.1 → XP_046786719.1  NSFL1 cofactor p47 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZK10.1 GenPept UniProtKB/Swiss-Prot:Q5ZK10

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.