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SGCG sarcoglycan gamma [ Gallus gallus (chicken) ]

Gene ID: 418945, updated on 17-Aug-2024

Summary

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Symbol
SGCGprovided by CGNC
Full Name
sarcoglycan gammaprovided by CGNC
Primary source
CGNC:12861
See related
Ensembl:ENSGALG00010006220
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (177530740..177644362, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (177563962..177676770, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109127 Neighboring gene sacsin molecular chaperone Neighboring gene uncharacterized LOC121109128 Neighboring gene uncharacterized LOC112531582 Neighboring gene uncharacterized LOC121109129

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan
Names
sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    177530740..177644362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015279196.4 → XP_015134682.1  gamma-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A1D5PL96, F1P171
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_025146853.3 → XP_025002621.2  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXF1

  3. XM_004938804.5 → XP_004938861.1  gamma-sarcoglycan isoform X3

    See identical proteins and their annotated locations for XP_004938861.1

    UniProtKB/TrEMBL
    A0A1D5PL96, F1P171
    Related
    ENSGALP00010008726.1, ENSGALT00010014813.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_025146852.3 → XP_025002620.2  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXF1

  5. XM_046902167.1 → XP_046758123.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXF1

  6. XM_417139.8 → XP_417139.2  gamma-sarcoglycan isoform X3

    See identical proteins and their annotated locations for XP_417139.2

    UniProtKB/TrEMBL
    A0A1D5PL96, F1P171
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_025146855.3 → XP_025002623.2  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXF1

  8. XM_040704332.2 → XP_040560266.1  gamma-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A1D5PL96, F1P171
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_025146854.3 → XP_025002622.2  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXF1
    Related
    ENSGALP00010008722.1, ENSGALT00010014806.1

  10. XM_046902171.1 → XP_046758127.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXF1

  11. XM_040704329.2 → XP_040560263.1  gamma-sarcoglycan isoform X2

  12. XM_040704344.2 → XP_040560278.1  gamma-sarcoglycan isoform X4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    177563962..177676770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040658476.2 → XP_040514410.1  gamma-sarcoglycan isoform X3

  2. XM_040658470.2 → XP_040514404.1  gamma-sarcoglycan isoform X1

  3. XM_040658474.2 → XP_040514408.1  gamma-sarcoglycan isoform X3

  4. XM_040658468.2 → XP_040514402.1  gamma-sarcoglycan isoform X1

  5. XM_046909880.1 → XP_046765836.1  gamma-sarcoglycan isoform X1

  6. XM_040658477.2 → XP_040514411.1  gamma-sarcoglycan isoform X3

  7. XM_040658471.2 → XP_040514405.1  gamma-sarcoglycan isoform X1

  8. XM_040658475.2 → XP_040514409.1  gamma-sarcoglycan isoform X3

  9. XM_040658467.2 → XP_040514401.1  gamma-sarcoglycan isoform X1

  10. XM_046909881.1 → XP_046765837.1  gamma-sarcoglycan isoform X1

  11. XM_040658473.2 → XP_040514407.1  gamma-sarcoglycan isoform X2

  12. XM_040658478.2 → XP_040514412.1  gamma-sarcoglycan isoform X4

RNA

  1. XR_005844080.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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