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PAN3 PAN3 poly(A) specific ribonuclease subunit [ Gallus gallus (chicken) ]

Gene ID: 418926, updated on 10-Oct-2024

Summary

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Symbol
PAN3provided by CGNC
Full Name
PAN3 poly(A) specific ribonuclease subunitprovided by CGNC
Primary source
CGNC:12837
See related
Ensembl:ENSGALG00010005296
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PAN3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (175775831..175853306, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (175858921..175936398, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene proteasome maturation protein Neighboring gene fms related receptor tyrosine kinase 1 Neighboring gene microRNA 6656 Neighboring gene fms related tyrosine kinase 3 Neighboring gene caudal type homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of PAN complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAN2-PAN3 deadenylation complex subunit PAN3
Names
PABP1-dependent poly A-specific ribonuclease subunit PAN3
PAN3 poly(A) specific ribonuclease subunit homolog
PAN3 polyA specific ribonuclease subunit homolog
poly(A) specific ribonuclease subunit PAN3
XP_015134193.1
XP_015134196.1
XP_015134202.1
XP_015134207.1
XP_015134211.1
XP_015134215.1
XP_015134217.1
XP_015134219.1
XP_040514308.1
XP_040514309.1
XP_040514310.1
XP_040514311.1
XP_040514312.1
XP_040514313.1
XP_040514314.1
XP_040514315.1
XP_040514316.1
XP_040514317.1
XP_040559843.1
XP_040559862.1
XP_046765174.1
XP_046765883.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    175775831..175853306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015278733.4 → XP_015134219.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:499 → 667
    PKc_like; Protein Kinases, catalytic domain

  2. XM_015278729.4 → XP_015134215.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X7

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:522 → 690
    PKc_like; Protein Kinases, catalytic domain

  3. XM_015278725.4 → XP_015134211.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X6

    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:546 → 714
    PKc_like; Protein Kinases, catalytic domain

  4. XM_015278721.4 → XP_015134207.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X5

    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:548 → 716
    PKc_like; Protein Kinases, catalytic domain

  5. XM_015278731.4 → XP_015134217.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X8

    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:515 → 683
    PKc_like; Protein Kinases, catalytic domain

  6. XM_015278716.4 → XP_015134202.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:566 → 734
    PKc_like; Protein Kinases, catalytic domain

  7. XM_015278710.4 → XP_015134196.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:567 → 735
    PKc_like; Protein Kinases, catalytic domain

  8. XM_015278707.4 → XP_015134193.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (2) summary
    pfam00642
    Location:50 → 69
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cl21453
    Location:569 → 737
    PKc_like; Protein Kinases, catalytic domain

  9. XM_040703909.2 → XP_040559843.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X4

    Conserved Domains (3) summary
    PHA03269
    Location:336 → 506
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:569 → 737
    PKc_like; Protein Kinases, catalytic domain

  10. XM_046909927.1 → XP_046765883.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X11

    Related
    ENSGALP00010007127.1, ENSGALT00010012563.1

  11. XM_040703928.1 → XP_040559862.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X10

    Conserved Domains (2) summary
    PHA03269
    Location:336 → 506
    PHA03269; envelope glycoprotein C; Provisional
    cl21453
    Location:569 → 737
    PKc_like; Protein Kinases, catalytic domain

RNA

  1. XR_001464336.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    175858921..175936398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040658382.2 → XP_040514316.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (3) summary
    PHA03269
    Location:266 → 436
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:497 → 665
    PKc_like; Protein Kinases, catalytic domain

  2. XM_040658380.2 → XP_040514314.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X7

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (3) summary
    PHA03269
    Location:287 → 457
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:520 → 688
    PKc_like; Protein Kinases, catalytic domain

  3. XM_040658379.2 → XP_040514313.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X6

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (3) summary
    PHA03269
    Location:313 → 483
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:544 → 712
    PKc_like; Protein Kinases, catalytic domain

  4. XM_040658378.2 → XP_040514312.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X5

    Conserved Domains (3) summary
    PHA03269
    Location:313 → 483
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:546 → 714
    PKc_like; Protein Kinases, catalytic domain

  5. XM_040658381.2 → XP_040514315.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X8

    Conserved Domains (3) summary
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    PHA03247
    Location:282 → 415
    PHA03247; large tegument protein UL36; Provisional
    cl21453
    Location:513 → 681
    PKc_like; Protein Kinases, catalytic domain

  6. XM_040658376.2 → XP_040514310.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (3) summary
    PHA03269
    Location:334 → 504
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:564 → 732
    PKc_like; Protein Kinases, catalytic domain

  7. XM_040658375.2 → XP_040514309.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (3) summary
    PHA03269
    Location:334 → 504
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:565 → 733
    PKc_like; Protein Kinases, catalytic domain

  8. XM_040658374.2 → XP_040514308.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XQH3
    Conserved Domains (3) summary
    PHA03269
    Location:334 → 504
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:567 → 735
    PKc_like; Protein Kinases, catalytic domain

  9. XM_040658377.2 → XP_040514311.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X4

    Conserved Domains (3) summary
    PHA03269
    Location:334 → 504
    PHA03269; envelope glycoprotein C; Provisional
    smart00356
    Location:46 → 71
    ZnF_C3H1; zinc finger
    cl21453
    Location:567 → 735
    PKc_like; Protein Kinases, catalytic domain

  10. XM_046909218.1 → XP_046765174.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X11

  11. XM_040658383.1 → XP_040514317.1  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X10

    Conserved Domains (2) summary
    PHA03269
    Location:334 → 504
    PHA03269; envelope glycoprotein C; Provisional
    cl21453
    Location:567 → 735
    PKc_like; Protein Kinases, catalytic domain

RNA

  1. XR_005844069.1 RNA Sequence

Nucleotide Protein Strain
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