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KATNAL1 katanin catalytic subunit A1 like 1 [ Gallus gallus (chicken) ]

Gene ID: 418920, updated on 17-Aug-2024

Summary

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Symbol
KATNAL1provided by CGNC
Full Name
katanin catalytic subunit A1 like 1provided by CGNC
Primary source
CGNC:12830
See related
Ensembl:ENSGALG00010007028
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See KATNAL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (175073649..175113469)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (175155877..175195969)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene high mobility group box 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC107052100 Neighboring gene microRNA 1646 Neighboring gene uncharacterized LOC124417632 Neighboring gene ubiquitin like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule severing ATPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
katanin p60 ATPase-containing subunit A-like 1
Names
katanin p60 subunit A-like 1
XP_004938820.1
XP_004938821.1
XP_004938822.1
XP_004938823.1
XP_015134117.1
XP_040514297.1
XP_040514298.1
XP_040514299.1
XP_040514300.1
XP_040514301.1
XP_046765170.1
XP_046765171.1
XP_046765172.1
XP_046765854.1
XP_046765855.1
XP_417114.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    175073649..175113469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004938763.5 → XP_004938820.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    See identical proteins and their annotated locations for XP_004938820.1

    UniProtKB/TrEMBL
    A0A8V0XRV3
    Conserved Domains (3) summary
    smart00382
    Location:239 → 381
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:243 → 379
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:449 → 487
    Vps4_C; Vps4 C terminal oligomerization domain

  2. XM_004938764.5 → XP_004938821.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    See identical proteins and their annotated locations for XP_004938821.1

    UniProtKB/TrEMBL
    A0A8V0XRV3
    Related
    ENSGALP00010009420.1, ENSGALT00010016679.1
    Conserved Domains (3) summary
    smart00382
    Location:239 → 381
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:243 → 379
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:449 → 487
    Vps4_C; Vps4 C terminal oligomerization domain

  3. XM_417114.8 → XP_417114.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    See identical proteins and their annotated locations for XP_417114.1

    UniProtKB/TrEMBL
    A0A8V0XRV3
    Conserved Domains (3) summary
    smart00382
    Location:239 → 381
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:243 → 379
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:449 → 487
    Vps4_C; Vps4 C terminal oligomerization domain

  4. XM_004938765.5 → XP_004938822.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    See identical proteins and their annotated locations for XP_004938822.1

    UniProtKB/TrEMBL
    A0A8V0XRV3
    Conserved Domains (3) summary
    smart00382
    Location:239 → 381
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:243 → 379
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:449 → 487
    Vps4_C; Vps4 C terminal oligomerization domain

  5. XM_046909898.1 → XP_046765854.1  katanin p60 ATPase-containing subunit A-like 1 isoform X2

  6. XM_015278631.4 → XP_015134117.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XRV3
    Conserved Domains (3) summary
    smart00382
    Location:239 → 381
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:243 → 379
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:449 → 487
    Vps4_C; Vps4 C terminal oligomerization domain

  7. XM_046909899.1 → XP_046765855.1  katanin p60 ATPase-containing subunit A-like 1 isoform X2

  8. XM_004938766.4 → XP_004938823.1  katanin p60 ATPase-containing subunit A-like 1 isoform X3

    Conserved Domains (3) summary
    smart00382
    Location:162 → 304
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:166 → 302
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:372 → 410
    Vps4_C; Vps4 C terminal oligomerization domain

RNA

  1. XR_003073450.3 RNA Sequence

  2. XR_001464253.4 RNA Sequence

  3. XR_001464254.4 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    175155877..175195969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046909214.1 → XP_046765170.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

  2. XM_040658364.2 → XP_040514298.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    Conserved Domains (1) summary
    COG0464
    Location:187 → 482
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

  3. XM_040658365.2 → XP_040514299.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    Conserved Domains (1) summary
    COG0464
    Location:187 → 482
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

  4. XM_040658366.2 → XP_040514300.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    Conserved Domains (1) summary
    COG0464
    Location:187 → 482
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

  5. XM_046909215.1 → XP_046765171.1  katanin p60 ATPase-containing subunit A-like 1 isoform X2

  6. XM_040658363.2 → XP_040514297.1  katanin p60 ATPase-containing subunit A-like 1 isoform X1

    Conserved Domains (1) summary
    COG0464
    Location:187 → 482
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

  7. XM_046909216.1 → XP_046765172.1  katanin p60 ATPase-containing subunit A-like 1 isoform X2

  8. XM_040658367.1 → XP_040514301.1  katanin p60 ATPase-containing subunit A-like 1 isoform X3

    Conserved Domains (1) summary
    COG0464
    Location:110 → 405
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]

RNA

  1. XR_005844057.2 RNA Sequence

  2. XR_006932922.1 RNA Sequence

  3. XR_005844058.2 RNA Sequence

Nucleotide Protein Strain
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