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ATG3 autophagy related 3 [ Gallus gallus (chicken) ]

Gene ID: 418369, updated on 17-Aug-2024

Summary

Symbol
ATG3provided by CGNC
Full Name
autophagy related 3provided by CGNC
Primary source
CGNC:11313
See related
Ensembl:ENSGALG00010005261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
APG3L
Orthologs
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Genomic context

See ATG3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (83833220..83856742)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (83885063..83908622)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 80 Neighboring gene solute carrier family 35 member A5 Neighboring gene coagulation factor V Neighboring gene solute carrier family 19 member 2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg8-family ligase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of cytoplasmic ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
ubiquitin-like-conjugating enzyme ATG3
Names
ATG3 autophagy related 3 homolog
Apg3p
NP_001264999.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001278070.2NP_001264999.1  ubiquitin-like-conjugating enzyme ATG3

    See identical proteins and their annotated locations for NP_001264999.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000019
    UniProtKB/TrEMBL
    A0A8V0XQ92
    Related
    ENSGALP00010007030.1, ENSGALT00010012466.1
    Conserved Domains (3) summary
    pfam03986
    Location:8133
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:203264
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    pfam10381
    Location:285308
    Autophagy_C; Autophagocytosis associated protein C-terminal

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    83833220..83856742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    83885063..83908622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)