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Nup93-2 Nucleoporin 93kD-2 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41804, updated on 2-Nov-2024

Summary

Official Symbol
Nup93-2provided by FlyBase
Official Full Name
Nucleoporin 93kD-2provided by FlyBase
Primary source
FLYBASE:FBgn0038274
Locus tag
Dmel_CG7262
See related
AllianceGenome:FB:FBgn0038274
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Cg7262; CG7262; Dmel\CG7262; nup93; Nup93; nup93-2; Nup93-like
Summary
Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nuclear pore organization; poly(A)+ mRNA export from nucleus; and protein import into nucleus. Predicted to be part of nuclear pore nuclear basket. Is expressed in several structures, including adult head; anterior endoderm; embryonic/larval midgut primordium; ganglia; and mesoderm. Used to study nephrotic syndrome type 12. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Orthologous to human NUP93 (nucleoporin 93). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See Nup93-2 in Genome Data Viewer
Location:
88D6-88D6; 3-56 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (14895703..14898372, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (10721425..10724094, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Ubiquinol-cytochrome c reductase core protein 1 Neighboring gene Diphthamide biosynthesis 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Vacuolar H[+] ATPase PPA1 subunit 2 Neighboring gene Ribosomal protein S5b

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables structural constituent of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of nuclear pore ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in nuclear pore organization ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in poly(A)+ mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 
part_of nuclear pore nuclear basket ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
nucleoporin 93kD-2
Names
CG7262-PA
Nup93-2-PA
nucleoporin 93

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    14895703..14898372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_142147.4NP_650404.1  nucleoporin 93kD-2 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650404.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VFE7
    Related
    FBpp0082467
    Conserved Domains (2) summary
    pfam04097
    Location:213781
    Nic96; Nup93/Nic96
    cl02374
    Location:178238
    DUF2461; Conserved hypothetical protein (DUF2461)