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GTF3C5 general transcription factor IIIC subunit 5 [ Gallus gallus (chicken) ]

Gene ID: 417164, updated on 17-Aug-2024

Summary

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Symbol
GTF3C5provided by CGNC
Full Name
general transcription factor IIIC subunit 5provided by CGNC
Primary source
CGNC:2509
See related
Ensembl:ENSGALG00010028829
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GTF3C5 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (7387371..7396782)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (6798991..6808404)

Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene tuberous sclerosis 1 Neighboring gene growth factor independent 1B transcriptional repressor Neighboring gene uncharacterized LOC112529984 Neighboring gene carboxyl ester lipase Neighboring gene ral guanine nucleotide dissociation stimulator like 4 Neighboring gene uncharacterized LOC107052213 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIIC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription factor 3C polypeptide 5
Names
general transcription factor IIIC, polypeptide 5, 63kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001389298.2 → NP_001376227.1  general transcription factor 3C polypeptide 5

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000308
    UniProtKB/TrEMBL
    A0A8V1AFN2
    Related
    ENSGALP00010042914.1, ENSGALT00010069735.1
    Conserved Domains (2) summary
    pfam09734
    Location:162 → 315
    Tau95; RNA polymerase III transcription factor (TF)IIIC subunit
    pfam17682
    Location:24 → 126
    Tau95_N; Tau95 Triple barrel domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7387371..7396782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046901770.1 → XP_046757726.1  general transcription factor 3C polypeptide 5 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AFN2

  2. XM_025156064.3 → XP_025011832.1  general transcription factor 3C polypeptide 5 isoform X2

    Conserved Domains (1) summary
    pfam09734
    Location:23 → 315
    Tau95; RNA polymerase III transcription factor (TF)IIIC subunit

  3. XM_040649059.2 → XP_040504993.1  general transcription factor 3C polypeptide 5 isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6798991..6808404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046928921.1 → XP_046784877.1  general transcription factor 3C polypeptide 5 isoform X1

    UniProtKB/TrEMBL
    A0A8V1AFN2

  2. XM_046928922.1 → XP_046784878.1  general transcription factor 3C polypeptide 5 isoform X2

  3. XM_046928923.1 → XP_046784879.1  general transcription factor 3C polypeptide 5 isoform X3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001030684.1: Suppressed sequence

    Description
    NM_001030684.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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