U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

thpR RNA 2',3'-cyclic phosphodiesterase [ Pyrococcus furiosus DSM 3638 ]

Gene ID: 41711813, updated on 27-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
thpR
Gene description
RNA 2',3'-cyclic phosphodiesterase
Locus tag
PFDSM3638_RS00055
Gene type
protein coding
Organism
Pyrococcus furiosus DSM 3638 (strain: DSM 3638, culture-collection: DSM:3638, type-material: type strain of Pyrococcus furiosus)
Lineage
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus
Old locus tag
PFDSM3638_00055
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

NZ_CP023154.1Genomic Context describing neighboring genes Neighboring gene glycerate kinase Neighboring gene class II glutamine amidotransferase Neighboring gene CCA tRNA nucleotidyltransferase Neighboring gene GNAT family N-acetyltransferase Neighboring gene hypothetical protein Neighboring gene DUF1611 domain-containing protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NZ_CP023154.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus. Kanai A, et al. RNA, 2009 Mar. PMID 19155324, Free PMC Article
  2. Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8. Kato M, et al. J Mol Biol, 2003 Jun 20. PMID 12798681
  3. The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption. Arn EA, et al. J Biol Chem, 1996 Dec 6. PMID 8940112
  4. Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences. Maeder DL, et al. Genetics, 1999 Aug. PMID 10430560, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
RNA 2',3'-cyclic phosphodiesterase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP023154.1 Reference assembly

    Range
    18310..18864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011011139.1 MULTISPECIES: RNA 2',3'-cyclic phosphodiesterase [Pyrococcus]

    See identical proteins and their annotated locations for WP_011011139.1

    UniProtKB/Swiss-Prot
    Q8U4Q3
    UniProtKB/TrEMBL
    A0A5C0XM93, I6U8X2
    Conserved Domains (1) summary
    COG1514
    Location:1 → 184
    LigT; 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8U4Q3.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases