TOM1L2 target of myb1 like 2 membrane trafficking protein [Gallus gallus (chicken)] - Gene

Summary

Symbol: TOM1L2provided by CGNC
Full Name: target of myb1 like 2 membrane trafficking proteinprovided by CGNC
Primary source: CGNC:3639
See related: Ensembl:ENSGALG00010017556
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	14	NC_052545.1 (4927096..4978180, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	14	NC_052586.1 (4921790..4972862, complement)

Chromosome 14 - NC_052545.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables clathrin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables phosphatidylinositol binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ubiquitin binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in signal transduction	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endosome	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: TOM1-like protein 2

Names: target of myb1-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001270967.2 → NP_001257896.1 TOM1-like protein 2

Status: VALIDATED

Source sequence(s)

JAENSK010000257

UniProtKB/TrEMBL

F1NIQ4

Related

ENSGALP00010024932.1, ENSGALT00010042442.1

Conserved Domains (2) summary

cd14238
Location:218 → 309

GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

cd16996
Location:12 → 148

VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

4927096..4978180 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015294182.4 → XP_015149668.1 TOM1-like protein 2 isoform X3

UniProtKB/TrEMBL

F1NIQ4

Conserved Domains (2) summary

cd14238
Location:218 → 309

GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

cd16996
Location:12 → 148

VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2
XM_015294181.4 → XP_015149667.1 TOM1-like protein 2 isoform X2

UniProtKB/TrEMBL

A0A3Q2TZG8

Related

ENSGALP00010024928.1, ENSGALT00010042438.1

Conserved Domains (2) summary

cd03565
Location:12 → 152

VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...

cd14238
Location:218 → 309

GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)
XM_015294180.4 → XP_015149666.1 TOM1-like protein 2 isoform X1

UniProtKB/TrEMBL

A0A3Q2TXR5

Related

ENSGALP00010024931.1, ENSGALT00010042441.1

Conserved Domains (2) summary

cd14238
Location:218 → 309

GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

cd16996
Location:12 → 148

VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

4921790..4972862 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046927369.1 → XP_046783325.1 TOM1-like protein 2 isoform X3

UniProtKB/TrEMBL

F1NIQ4
XM_046927368.1 → XP_046783324.1 TOM1-like protein 2 isoform X2

UniProtKB/TrEMBL

A0A3Q2TZG8
XM_046927367.1 → XP_046783323.1 TOM1-like protein 2 isoform X1

UniProtKB/TrEMBL

A0A3Q2TXR5