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SNX8 sorting nexin 8 [ Gallus gallus (chicken) ]

Gene ID: 416468, updated on 10-Oct-2024

Summary

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Symbol
SNX8provided by CGNC
Full Name
sorting nexin 8provided by CGNC
Primary source
CGNC:3128
See related
Ensembl:ENSGALG00010019962
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SNX8 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (3087929..3112332, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (3086136..3110510, complement)

Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene mitochondrial rRNA methyltransferase 2 Neighboring gene nudix hydrolase 1 Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene carbohydrate sulfotransferase 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3087929..3112332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046900999.1 → XP_046756955.1  sorting nexin-8 isoform X4

  2. XM_046900998.1 → XP_046756954.1  sorting nexin-8 isoform X4

  3. XM_025155202.3 → XP_025010970.1  sorting nexin-8 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZCL4
    Conserved Domains (2) summary
    cd06866
    Location:22 → 125
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:142 → 387
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  4. XM_015294346.4 → XP_015149832.1  sorting nexin-8 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZCL4
    Conserved Domains (2) summary
    cd06866
    Location:22 → 125
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:142 → 387
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  5. XM_414774.8 → XP_414774.6  sorting nexin-8 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z5D1, A0A8V0ZCL4
    Related
    ENSGALP00010028441.1, ENSGALT00010048232.1
    Conserved Domains (2) summary
    cd06866
    Location:58 → 161
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:178 → 423
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  6. XM_046900997.1 → XP_046756953.1  sorting nexin-8 isoform X4

    Related
    ENSGALP00010028423.1, ENSGALT00010048199.1

  7. XM_015294345.4 → XP_015149831.1  sorting nexin-8 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2U5T3, A0A8V0ZCL4
    Related
    ENSGALP00010028433.1, ENSGALT00010048217.1
    Conserved Domains (2) summary
    cd06866
    Location:50 → 153
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:170 → 415
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  8. XM_025155201.3 → XP_025010969.1  sorting nexin-8 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZCL4, A0A8V0ZIN4
    Related
    ENSGALP00010028436.1, ENSGALT00010048224.1
    Conserved Domains (2) summary
    cd06866
    Location:75 → 178
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:195 → 440
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  9. XM_025155200.3 → XP_025010968.2  sorting nexin-8 isoform X5

    UniProtKB/TrEMBL
    A0A8V0ZCL4, A0A8V0ZIM9
    Related
    ENSGALP00010028431.1, ENSGALT00010048212.1
    Conserved Domains (2) summary
    cd06866
    Location:89 → 192
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:209 → 454
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  10. XM_046901000.1 → XP_046756956.1  sorting nexin-8 isoform X4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3086136..3110510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046927770.1 → XP_046783726.1  sorting nexin-8 isoform X4

  2. XM_046927769.1 → XP_046783725.1  sorting nexin-8 isoform X4

  3. XM_040684118.2 → XP_040540052.1  sorting nexin-8 isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZCL4
    Conserved Domains (2) summary
    cd06866
    Location:22 → 125
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:142 → 387
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  4. XM_046927771.1 → XP_046783727.1  sorting nexin-8 isoform X4

  5. XM_046927768.1 → XP_046783724.1  sorting nexin-8 isoform X4

  6. XM_040684116.2 → XP_040540050.1  sorting nexin-8 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z5D1, A0A8V0ZCL4
    Conserved Domains (2) summary
    cd06866
    Location:58 → 161
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:178 → 423
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  7. XM_046927767.1 → XP_046783723.1  sorting nexin-8 isoform X4

  8. XM_040684117.2 → XP_040540051.1  sorting nexin-8 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2U5T3, A0A8V0ZCL4
    Conserved Domains (2) summary
    cd06866
    Location:50 → 153
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:170 → 415
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  9. XM_040684115.2 → XP_040540049.1  sorting nexin-8 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZCL4, A0A8V0ZIN4
    Conserved Domains (2) summary
    cd06866
    Location:75 → 178
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:195 → 440
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  10. XM_040684114.2 → XP_040540048.1  sorting nexin-8 isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZCL4
    Conserved Domains (2) summary
    cd06866
    Location:83 → 186
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:203 → 448
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  11. XM_046927772.1 → XP_046783728.1  sorting nexin-8 isoform X4

Nucleotide Protein
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