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CANX calnexin [ Gallus gallus (chicken) ]

Gene ID: 416288, updated on 10-Oct-2024

Summary

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Symbol
CANXprovided by CGNC
Full Name
calnexinprovided by CGNC
Primary source
CGNC:4443
See related
Ensembl:ENSGALG00010016947
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See CANX in Genome Data Viewer
Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (13140772..13158529, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (13154733..13172509, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene leukotriene C4 synthase Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene leukotriene C4 synthase Neighboring gene heterogeneous nuclear ribonucleoprotein H1 Neighboring gene deoxycytidine kinase 2 Neighboring gene RUN and FYVE domain containing 1 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calnexin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030620.2 → NP_001025791.2  calnexin precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000256
    UniProtKB/TrEMBL
    A0A8V0YS98, Q5ZMF5
    Conserved Domains (1) summary
    pfam00262
    Location:74 → 443
    Calreticulin; Calreticulin family

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13140772..13158529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293792.4 → XP_015149278.1  calnexin isoform X1

    UniProtKB/TrEMBL
    A0A8V0YS98, Q5ZMF5
    Related
    ENSGALP00010023894.1, ENSGALT00010040930.1
    Conserved Domains (1) summary
    pfam00262
    Location:74 → 443
    Calreticulin; Calreticulin family

  2. XM_040646911.2 → XP_040502845.1  calnexin isoform X1

    UniProtKB/TrEMBL
    A0A8V0YS98, Q5ZMF5
    Conserved Domains (1) summary
    pfam00262
    Location:74 → 443
    Calreticulin; Calreticulin family

  3. XM_046900364.1 → XP_046756320.1  calnexin isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13154733..13172509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926988.1 → XP_046782944.1  calnexin isoform X1

  2. XM_046926989.1 → XP_046782945.1  calnexin isoform X1

  3. XM_046926990.1 → XP_046782946.1  calnexin isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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